Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1 241 2e-58 seq24 145 1e-29 >seq1 Length=1646047 Score = 241 bits (266), Expect = 2e-58 Identities = 475/702 (68%), Gaps = 8/702 (1%) Strand=Plus/Plus Query 244687 GGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAG 244746 ||||| ||||||||| || ||||| || | | ||||| | ||||| ||||| || Sbjct 679311 GGCCAAGTTGCAGACTGCGACCTCATCTGGTGCAGAGTACTCAATGATCTCAGTGCATAG 679370 Query 244747 GTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTT 244806 ||| ||||||| || || |||||||| || ||||| ||||||||| |||||| || Sbjct 679371 GTTGGATGACTTGATCGTCCCGAGGTGCTGTTGGTTGGATTTGGCGTTGGCGGCGTCTTT 679430 Query 244807 GTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTC 244866 ||| ||||||||||| ||||||||| |||||| |||||| | | ||| || | Sbjct 679431 GTAAAGCATGAAGGGGTTACCGGTCTCGGTCTGGGCCTCGAGGATGGCGAACCAAAGCTT 679490 Query 244867 CCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTC 244926 | ||||||| ||| ||||| ||||||| | |||||||| ||||||| ||| Sbjct 679491 CTGTGCCTTGATGGTCTTGCGACCCTTGCCAGCCTTCTCGTAGCTCTCGTACAGGCGCTC 679550 Query 244927 GAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCA 244986 ||||| ||| | ||| || ||||||||| || |||||||| | | |||| Sbjct 679551 AAACTCTTCGCCGTGGCAGTCGGAAAGACCGGGGCACTCTGCAGGGCACATTAAAGTCCA 679610 Query 244987 CTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAG 245046 || ||| | | ||| | || |||||| || || | |||||| || || | ||| || Sbjct 679611 ATCACCGTCAGATTCGACTCGCTTCATGAAAAGATCTGAGATCCACAGTGCGTAGAACAG 679670 Query 245047 GTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGAC 245106 ||| | || | ||| ||| ||| |||||| | || || | ||||||||||| Sbjct 679671 GTCTCGGGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGAAGGTCGAGGAAGTCAAAGAC 679730 Query 245107 GTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTG 245166 ||| | ||||| ||||| | ||| | || | || || || ||||||||||| || || Sbjct 679731 ATCGGCATGCCAAGGCTCGAGGTAAATGGCAAATGCACCCGGTCGCTTGTTGCCACCTTG 679790 Query 245167 GTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAG 245222 || | | | ||||| || | |||| || || | ||||| || ||||| | Sbjct 679791 ATCGA----CGTAACGAGCGGTGGCATCGAAGGCTCGGAGCATGGGCACAATACCGTTGG 679846 Query 245223 AGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGC 245282 ||| ||| || || || ||||| | |||||| ||| || |||| |||| | | Sbjct 679847 AGTAGCCATTTGTACCGGCAATGTAAGAGCCCTTTGCCCGGATGTTGTGGATGTGGAGAC 679906 Query 245283 CTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCT 245342 | | || || ||| ||||||||| ||| || |||||| ||| || || || | Sbjct 679907 CGATACCACCTGCGGTCTTGGAGATCTTGGCACAAGTCTTGAGGGTCTCGTAGATACCGT 679966 Query 245343 CCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACA 245384 | || ||| || ||| || || |||||||| |||| Sbjct 679967 CGATCGAGTCATCCTGCATTGCGACGAGGAAGCAGGACGACA 680008 >seq24 Length=290538 Score = 145 bits (160), Expect = 1e-29 Identities = 244/346 (71%), Gaps = 19/346 (5%) Strand=Plus/Plus Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGAT----CC 42592 || ||| | ||||||||| ||| | ||| | ||||||||||| ||| || Sbjct 18857 GAAAACATCCACTCTGAGACCTACTCTCTCCTGATTGACACGTACATCAAAGATGCCGCC 18916 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 || ||| | || | | ||| | ||||| || || || || || ||| | |||||||| Sbjct 18917 CGCCGAACATACC----TATTCGAAGCCATCGACACTATCCCATGTATCCAAAAGAAGGC 18972 Query 42653 GGACTGGGCGCTCAACTGGATCGA-GAGTCCCGACG--CAACGTTCGGCGAGAGGCTGGT 42709 ||||||| ||||| |||||| || || ||| | || || | ||| | || | Sbjct 18973 CAACTGGGCACTCAAGTGGATCTCTGA---CCAACGATCCACATTTGCTGAGCGATTGAT 19029 Query 42710 AGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCT 42769 |||||| |||| || ||||| |||||||| || || | || || |||||||||||||| Sbjct 19030 CGCCTTTGCCGCTGTAGAGGGTATCTTCTTTTCAGGATCATTTGCGTCCATCTTCTGGCT 19089 Query 42770 CAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACG 42828 |||| | ||| || |||||||| || || ||||| ||||| |||||| | |||| Sbjct 19090 CAAGAAACGAGGACTC-ATGCCCGGTCTTACATTCTCAAACGAGCTCATCTCGCGAGACG 19148 Query 42829 AGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCT 42874 |||| || || | |||||||| || ||| ||||| |||||||| Sbjct 19149 AGGGTCTTCACACCGACTTTGCTTGTCTCTTGTTC---AGCCACCT 19191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337417559760