Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1 165 1e-35 seq24 113 5e-20 >seq1 Length=1646047 Score = 165 bits (182), Expect = 1e-35 Identities = 542/834 (65%), Gaps = 29/834 (3%) Strand=Plus/Plus Query 114386 AGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAA-ACTGCGAGT 114444 || || |||||||| ||||| | ||| || || ||||| | | | ||| | ||| || Sbjct 679219 AGGTTCTTGGTGACCACCTTGGCGATCTCGTGGAGCTTCTTGAAGTCATAGACTC---GT 679275 Query 114445 CTCTTCATT--GACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCA 114502 | || ||| ||| | |||||| || | || |||| || || || | | |||| Sbjct 679276 CGCTCCATGTCGACGAAGGCAGGAAGAGCAAGCGAGGCCAAGTTGCAGACTGCGACCTCA 679335 Query 114503 TCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAG 114562 || ||| |||||| || || || || || | || || ||| || || || | | Sbjct 679336 TCTGGTGCAGAGTACTCAATGATCTCAGTGCATAGGTTGGATGACTTGATCGTCCCGAGG 679395 Query 114563 TTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTC 114622 | || ||| || || || | ||| || || |||||||||||| | || | || ||| Sbjct 679396 TGCTGTTGGTTGGATTTGGCGTTGGCGGCGTCTTTGTAAAGCATGAAGGGGTTACCGGTC 679455 Query 114623 TCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGC 114681 || || |||| || ||| || || ||| | | || | | || | ||| ||| Sbjct 679456 TCGGTCTGGGCCTCGAGGATGGCGAACCAAAGCTTCTGTGCCTTGA----TGGTCTTG-- 679509 Query 114682 TCGCCCCT------CCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGC 114735 || |||| ||| |||||| | ||| ||| ||||||||||| || | Sbjct 679510 -CGACCCTTGCCAGCCTTCTCGTAGCTCTCGTACAGGCGCTCAAACTCTTCGCCGTGGCA 679568 Query 114736 CTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAAC 114795 || || || || || || | ||||| | | || ||| | ||| | || || Sbjct 679569 GTCGGAAAGACCGGGGCACTCTGCAGGGCACATTAAAGTCCAATCACCGTCAGATTCGAC 679628 Query 114796 ACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTC 114855 ||||||||||| || |||| |||||| || || |||| || || || ||| | || Sbjct 679629 TCGCTTCATGAAAAGATCTGAGATCCACAGTGCGTAGAACAGGTCTCGGGCGCGGACCTC 679688 Query 114856 TTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTC 114915 ||| | || || || || | || | ||||| | || ||| || ||||| || || Sbjct 679689 TTCCTTGCCGTGGTTCTTGCGAAGGTCGAGGAAGTCAAAGACATCGGCATGCCAAGGCTC 679748 Query 114916 CAGGTACACCGCGATTG-ACCC-----CTTACGACGACCAGCCTGGTTTACATACCTCGC 114969 ||||| | || | || |||| ||| | | ||| | || | || || | || Sbjct 679749 GAGGTAAATGGCAAATGCACCCGGTCGCTT--GTTG-CCACCTTGATCGACGTAACGAGC 679805 Query 114970 TGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCG 115029 ||||||| || | || ||||| || | ||||| | || | ||||||||| || Sbjct 679806 GGTGGCATCGAAGGCTCGGAGCATGGGCACAATACCGTTGGAGTAGCCATTTGTACCGGC 679865 Query 115030 AATACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTT 115089 ||| ||| || || | || | |||||||| | ||| ||||| ||||| ||| Sbjct 679866 AATGTAAGAGCCCTTTGCCCGGATGTTGTGGATGTGGAGACCGATACCACCTGCGGTCTT 679925 Query 115090 TGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATT 115149 ||||| | || || | |||| | ||||||| ||||||||||||||| ||| | Sbjct 679926 GGAGATCTTGGCACAAGTCTTGAGGGTCTCGTAGATACCGTCGATCGAGTCATCCTGCAT 679985 Query 115150 TGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAG 115203 ||||| ||||||||| ||||||||| || |||||||| ||||||||||| Sbjct 679986 TGCGACGAGGAAGCAGGACGACATTTGAGGGTGAGGTGTACCGGCGTTGAAGAG 680039 >seq24 Length=290538 Score = 113 bits (124), Expect = 5e-20 Identities = 175/246 (71%), Gaps = 8/246 (3%) Strand=Plus/Minus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| ||||||||||| || |||||||| || || ||||| || || Sbjct 19170 GCAAAGTCGGTGTGAAGACCCTCGTCTCGCGAGATGAGCTCGTTTGAGAATGTAAGACCG 19111 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 |||||||| || || ||||| | |||||| || | |||||| || || |||||||| Sbjct 19110 GGCATGAGTCCTCGTTTCTTGAGCCAGAAGATGGACGCAAATGATCCTGAAAAGAAGATA 19051 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGA-CTTTGTGTCA-- 126223 ||||| ||| || || || | | ||||||||||| | | || | ||| |||| Sbjct 19050 CCCTCTACAGCGGCAAAGGCGATCAATCGCTCAGCAAATGTG---GATCGTTG-GTCAGA 18995 Query 126224 -AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTC 126282 | |||||| | ||||| | ||||| || | |||||| |||| || | ||| ||||| Sbjct 18994 GATCCACTTGAGTGCCCAGTTGGCCTTCTTTTGGATACATGGGATAGTGTCGATGGCTTC 18935 Query 126283 AAAGAG 126288 || || Sbjct 18934 GAATAG 18929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597352472495080