Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq24 109 5e-19 seq1 87.8 2e-12 seq77 82.4 8e-11 >seq24 Length=290538 Score = 109 bits (120), Expect = 5e-19 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || ||||||||||| || | || | | | |||||||| || ||||||||||||||| Sbjct 53793 CCACCACGCAAACGCAAGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 53734 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||| ||||||||||| || | |||| || ||||||||||| ||||| Sbjct 53733 AGAGTGCGGCCGTCTTCGAGTTGTTTTCCCGCGAAGATGAGTCGCTGTTGGTCAGGAGGA 53674 Query 138508 ATACCTTC 138515 |||||||| Sbjct 53673 ATACCTTC 53666 >seq1 Length=1646047 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 153820 TCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGAC 153879 ||||||| | ||||||||| ||||||||||| ||||||| |||||||| || ||||| | Sbjct 679526 TCTCGTAGCTCTCGTACAGGCGCTCAAACTCTTCGCCGTGGCAGTCGGAAAGACCGGGGC 679585 Query 153880 ACTGATGC-GGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGA 153938 ||| ||| || ||||| | | ||| | |||| | | ||| || |||||| ||| Sbjct 679586 ACT-CTGCAGGGCACATTAAAGTCCAATCACCGTCAGATTCGACTCGCTTCATGAAAAGA 679644 Query 153939 TCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGC 153973 || | | ||| || ||||| | ||||| || || Sbjct 679645 TCTGAGATCCACAGTGCGTAGAACAGGTCTCGGGC 679679 >seq77 Length=196091 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||| | ||| || | || | | |||||||| || || ||||||||| | Sbjct 17689 CCACCTCGCAGCCTCAAGACGAGGTGGAGAGTGGACTCCTTCTGGATATTGTAGTCGGAC 17748 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| |||||||| || || |||| |||| || ||||||||||| || || Sbjct 17749 AAGGTACGACCATCCTCGAGCTGCTTGCCGGCGAAGATGAGTCGCTGTTGGTCGGGTGGG 17808 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| || || | |||| || | ||||| | ||||| || Sbjct 17809 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTG-TCGATCGTGTCCGAGGACTCGAC 17867 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAG 138593 ||| | || | ||| ||||| || || Sbjct 17868 CTCAAGGGTGATCGTCTTACCCGTAAG 17894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261463304720