Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq24 104 2e-17 seq77 93.3 4e-14 >seq24 Length=290538 Score = 104 bits (114), Expect = 2e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || || || || || ||| ||||||||||||| ||||||||||| || ||||||||| Sbjct 52889 TCCTCAAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGATCGGGAGGAATACCCTCCTTG 52830 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| || ||||| |||| || | |||||| | ||| || || | ||| | Sbjct 52829 TCCTGGATCTTGGCCTTGACGTTG-TCAATGGTGTCGGACGACTCAACCTCAAGGGTGAT 52771 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||||||| || ||||| || || |||||||| Sbjct 52770 GGTCTTGCCGGTAAGGGTTTTGACGAAGATCTGCAT 52735 Score = 95.1 bits (104), Expect = 1e-14 Identities = 104/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || |||||||| || ||| ||||||||||||| || |||||||| || |||||||| Sbjct 52615 ATCCTCAAGCTGTTTGCCGGCGAAGATCAATCGCTGTTGGTCGGGAGGAATACCCTCCTT 52556 Query 127018 GTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCA 127076 |||| ||| || ||||| |||| || | |||||||| | || || |||| ||| | Sbjct 52555 GTCCTGGATCTTGGCCTTGACGTTG-TCAATGGTGTCCGAAGATTCAACCTCGAGGGTGA 52497 Query 127077 CCGTTTTGCCGGTCAG 127092 || ||||| || || Sbjct 52496 TAGTCTTGCCAGTAAG 52481 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || ||||| | || | || | || || || || || |||||||| ||| Sbjct 53236 CCACCTCGCAATCGAAGGACAAGGTGGAGAGTCGATTCCTTCTGGATATTGTAGTCGGAG 53177 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || || || ||||| || || ||| |||| | ||||||||||| || || Sbjct 53176 AGCGTTCGGCCGTCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCAGGTGGG 53117 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| ||| |||| |||| || | ||| || | ||||| Sbjct 53116 ATACCCTCCTTGTCCTGGATCTTCGCTTTGACGTTG-TCAATGGTATCGGACGATTCGAC 53058 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || |||||||| || || ||||| || || ||||| Sbjct 53057 CTCAAGCGTGATAGTCTTGCCGGTAAGGGTCTTTACGAAGATTTGCAT 53010 >seq77 Length=196091 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | | ||| || | || | || ||||| || || |||||||| ||| Sbjct 17686 GCACCACCTCGCAGCCTCAAGACGAGGTGGAGAGTGGACTCCTTCTGGATATTGTAGTCG 17745 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || ||| ||| || ||||| || || ||| |||| | |||||| || ||||| Sbjct 17746 GACAAGGTACGACCATCCTCGAGCTGCTTGCCGGCGAAGATGAGTCGCTGTTGGTCGGGT 17805 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || |||||||||||| ||| || ||||| | |||| ||||||| |||| Sbjct 17806 GGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCG 17865 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAG 127092 || || | ||| | ||| || || || || Sbjct 17866 ACCTCAAGGGTGATCGTCTTACCCGTAAG 17894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499902492240