Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1 150 2e-31 seq24 116 5e-21 >seq1 Length=1646047 Score = 150 bits (166), Expect = 2e-31 Identities = 540/834 (65%), Gaps = 29/834 (3%) Strand=Plus/Plus Query 116347 AGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAA-ACTGCGAGT 116405 || || |||||||| ||||| | ||| || || ||||| | | | ||| | ||| || Sbjct 679219 AGGTTCTTGGTGACCACCTTGGCGATCTCGTGGAGCTTCTTGAAGTCATAGACTC---GT 679275 Query 116406 CTCTTCATT--GACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCA 116463 | || ||| ||| | |||||| || | || |||| || || || | | |||| Sbjct 679276 CGCTCCATGTCGACGAAGGCAGGAAGAGCAAGCGAGGCCAAGTTGCAGACTGCGACCTCA 679335 Query 116464 TCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAG 116523 || ||| |||||| || || || || || | || || ||| || || || | | Sbjct 679336 TCTGGTGCAGAGTACTCAATGATCTCAGTGCATAGGTTGGATGACTTGATCGTCCCGAGG 679395 Query 116524 TTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTC 116583 | || ||| || || || | ||| || || ||||| ||||| | || | || ||| Sbjct 679396 TGCTGTTGGTTGGATTTGGCGTTGGCGGCGTCTTTGTAAAGCATGAAGGGGTTACCGGTC 679455 Query 116584 TCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGC 116642 || || |||| || ||| || || ||| | | || | | || | ||| ||| Sbjct 679456 TCGGTCTGGGCCTCGAGGATGGCGAACCAAAGCTTCTGTGCCTTGA----TGGTCTTG-- 679509 Query 116643 TCGCCCCT------CCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCA--CA 116694 || |||| ||| |||||| | ||| ||| |||||||||||| || || Sbjct 679510 -CGACCCTTGCCAGCCTTCTCGTAGCTCTCGTACAGGCGCTCAAACTCTTCGCCGTGGCA 679568 Query 116695 GCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCA 116754 | || || || || || || | || || | | || ||| | ||| | || Sbjct 679569 G--TCGGAAAGACCGGGGCACTCTGCAGGGCACATTAAAGTCCAATCACCGTCAGATTCG 679626 Query 116755 ACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCT 116814 || ||||||||||| || |||| |||||| || || |||| || || || ||| | Sbjct 679627 ACTCGCTTCATGAAAAGATCTGAGATCCACAGTGCGTAGAACAGGTCTCGGGCGCGGACC 679686 Query 116815 TCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGT 116874 ||||| | || || || || | || | ||||| | || ||| || ||||| || Sbjct 679687 TCTTCCTTGCCGTGGTTCTTGCGAAGGTCGAGGAAGTCAAAGACATCGGCATGCCAAGGC 679746 Query 116875 TCCAGGTACACCGCGATTGACCCC--TTGC--GACGACCAGCCTGGTTTACATACCTCGC 116930 || ||||| | || | || ||| | || | | ||| | || | || || | || Sbjct 679747 TCGAGGTAAATGGCAAATGCACCCGGTCGCTTGTTG-CCACCTTGATCGACGTAACGAGC 679805 Query 116931 CGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCG 116990 || || | || | || ||||| || | ||||| | || | ||||||||| || Sbjct 679806 GGTGGCATCGAAGGCTCGGAGCATGGGCACAATACCGTTGGAGTAGCCATTTGTACCGGC 679865 Query 116991 AATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTT 117050 ||| ||| || || | || | ||||||||| | ||| ||||| ||||| ||| Sbjct 679866 AATGTAAGAGCCCTTTGCCCGGATGTTGTGGATGTGGAGACCGATACCACCTGCGGTCTT 679925 Query 117051 TGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATT 117110 ||||| | || || | |||| | ||||||| || |||||||||||| ||| | Sbjct 679926 GGAGATCTTGGCACAAGTCTTGAGGGTCTCGTAGATACCGTCGATCGAGTCATCCTGCAT 679985 Query 117111 TGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAG 117164 ||||| |||||||||| ||||||||| || |||||||| ||||||||||| Sbjct 679986 TGCGACGAGGAAGCAGGACGACATTTGAGGGTGAGGTGTACCGGCGTTGAAGAG 680039 >seq24 Length=290538 Score = 116 bits (128), Expect = 5e-21 Identities = 175/246 (71%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| ||||||||||| || |||||||| || || ||||| ||||| Sbjct 19171 AGCAAAGTCGGTGTGAAGACCCTCGTCTCGCGAGATGAGCTCGTTTGAGAATGTAAGACC 19112 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 |||||||| || || ||||| | |||||| || | |||||| || || |||||||| Sbjct 19111 GGGCATGAGTCCTCGTTTCTTGAGCCAGAAGATGGACGCAAATGATCCTGAAAAGAAGAT 19052 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCA-- 127696 ||||| ||| || || || | | ||||| ||||| | || | ||| ||| Sbjct 19051 ACCCTCTACAGCGGCAAAGGCGATCAATCGCTCAGCAAA--TGTGGATCGTTG-GTCAGA 18995 Query 127697 -AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTC 127755 | |||||| | ||||| | ||||| || | ||||||||||| || | ||| ||||| Sbjct 18994 GATCCACTTGAGTGCCCAGTTGGCCTTCTTTTGGATACATGGGATAGTGTCGATGGCTTC 18935 Query 127756 AAAGAG 127761 || || Sbjct 18934 GAATAG 18929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506042005160