Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq77 129 1e-24 seq24 125 2e-23 >seq77 Length=196091 Score = 129 bits (142), Expect = 1e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || |||| ||| ||||||||||| |||||||| |||| |||||||| | ||| || Sbjct 17694 TCGCAGCCTCAAGACGAGGTGGAGAGTGGACTCCTTCTGGATATTGTAGTCGGACAAGGT 17753 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||| || |||||||| |||||||||||||| ||||| ||||| || || || Sbjct 17754 ACGACCATCCTCGAGCTGCTTGCCGGCGAAGATGAGTCGCTGTTGGTCGGGTGGGATACC 17813 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||| ||||| ||| || |||| ||||| | | || || || | Sbjct 17814 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCAAG 17873 Query 199588 CGTGATCGTCTTACCCGTGAG 199608 ||||||||||||||||| || Sbjct 17874 GGTGATCGTCTTACCCGTAAG 17894 Score = 86.0 bits (94), Expect = 1e-11 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 200934 ACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCA 200993 ||| ||||||||||| |||||| | || ||||| | || ||| |||| ||||| |||| Sbjct 17790 ACTCATCTTCGCCGGCAAGCAGCTCGAGGATGGTCGTACCTTGTCCGACTACAATATCCA 17731 Query 200994 GAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030 ||| ||||| ||||| ||||| || ||||| || ||| Sbjct 17730 GAAGGAGTCCACTCTCCACCTCGTCTTGAGGCTGCGA 17694 >seq24 Length=290538 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||||||||||||||| ||||| |||| |||||||| | | || | || ||| Sbjct 53221 AGGACAAGGTGGAGAGTCGATTCCTTCTGGATATTGTAGTCGGAGAGCGTTCGGCCGTCT 53162 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||||||||||||||||||||| || || || || || ||| Sbjct 53161 TCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCC 53102 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| || ||| || | ||| || | | ||| || || | |||||| ||| Sbjct 53101 TGGATCTTCGCTTTGACGTTGTCAATGGTATCGGACGATTCGACCTCAAGCGTGATAGTC 53042 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || || ||||| Sbjct 53041 TTGCCGGTAAGGGTCTTTACGAAGATTTG 53013 Score = 93.3 bits (102), Expect = 1e-13 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 || ||| ||||| || || |||||||| |||| ||||||||| || ||| | || || Sbjct 53779 CAAGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTC 53720 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 ||| || || ||||| ||||||||||| ||||| ||||| ||| ||| ||||| Sbjct 53719 TTCGAGTTGTTTTCCCGCGAAGATGAGTCGCTGTTGGTCAGGAGGAATACCTTC 53666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178919319155117