Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq24 132 5e-26 seq77 102 9e-17 >seq24 Length=290538 Score = 132 bits (146), Expect = 5e-26 Identities = 146/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||||||||||||||| || || || |||| || ||||||||||||||||| Sbjct 53200 TCCTTCTGGATATTGTAGTCGGAGAGCGTTCGGCCGTCTTCAAGCTGCTTGCCGGCGAAG 53141 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | |||||||| || | || | | |||||||||| ||||||| |||| ||| Sbjct 53140 ATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCCTGGATCTTCGCTTTGA-CGTT 53082 Query 46523 GCCACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | || | | ||| |||||| || || | |||||| || ||||| || || || || || Sbjct 53081 GTCAATGGTATCGGACGATTCGACCTCAAGCGTGATAGTCTTGCCGGTAAGGGTCTTTAC 53022 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 53021 GAAGATTTGCAT 53010 Score = 118 bits (130), Expect = 1e-21 Identities = 135/179 (75%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 46416 TGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCT 46475 |||||||||| || || || |||| || || |||||||||||||| ||||| ||||| | Sbjct 52912 TGTAGTCGGAAAGGGTTCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAATCGCTGTT 52853 Query 46476 GGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCG 46534 | |||| || | | |||||||||| |||||| ||||| ||| | | | |||||| Sbjct 52852 GATCGGGAGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCG 52794 Query 46535 CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || || | |||||||| ||||| || || ||||| || ||||| ||||| Sbjct 52793 GACGACTCAACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAGATCTGCAT 52735 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 46416 TGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCT 46475 ||||||| || || || || | || || ||||| ||||||||||| ||||| ||||| | Sbjct 52637 TGTAGTCTGAGAGGGTTCGGCCATCCTCAAGCTGTTTGCCGGCGAAGATCAATCGCTGTT 52578 Query 46476 GGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCG 46534 |||||| || | | |||||||||| |||||| ||||| ||| | | | ||||| Sbjct 52577 GGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCC 52519 Query 46535 CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAG 46572 ||||| || || | ||||| || ||||| || || Sbjct 52518 GAAGATTCAACCTCGAGGGTGATAGTCTTGCCAGTAAG 52481 >seq77 Length=196091 Score = 102 bits (112), Expect = 9e-17 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||||||||||||||| | || || | || |||||||||||||||||||| Sbjct 17724 CTCCTTCTGGATATTGTAGTCGGACAAGGTACGACCATCCTCGAGCTGCTTGCCGGCGAA 17783 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||| ||||||| || | | |||||||||| |||||| ||||| | Sbjct 17784 GATGAGTCGCTGTTGGTCGGGTGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATT 17843 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAG 46572 | | |||||| || || || || | ||||| || || ||||| || Sbjct 17844 GTCGATCGTGTCCGAGGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAG 17894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237333112520