Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq24 113 5e-20 seq84 96.9 3e-15 seq77 86.0 6e-12 >seq24 Length=290538 Score = 113 bits (124), Expect = 5e-20 Identities = 173/247 (70%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 |||||| | |||||||||||| || | |||||||| | || ||||| ||||| Sbjct 19184 TGAACAAGAGACAAGCAAAGTCGGTGTGAAGACCCTCGTCTCGCGAGATGAGCTCGTTTG 19125 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 ||| || | ||||||||||| || ||||| |||||||| || |||| || || | Sbjct 19124 AGAATGTAAGACCGGGCATGAGTCCTCGTTTCTTGAGCCAGAAGATGGACGCAAATGATC 19065 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063 | |||||||||| ||||| || || || || || | || ||||| | || |||| | Sbjct 19064 CTGAAAAGAAGATACCCTCTACAGCGGCAAAGGCGATCAATCGCTCAGCAAATGTGGATC 19005 Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 || | | |||||| || ||||| | |||||| | || || || || || || | Sbjct 19004 GTTGGTCAGAGATCCACTTGAGTGCCCAGTTGGCCTTCTTTTGGATACATGGGATAGTGT 18945 Query 133124 CGATGGC 133130 ||||||| Sbjct 18944 CGATGGC 18938 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 38343 GAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAG 38402 || || ||||| | ||||||||||| ||||| | |||||| ||||| || || |||| Sbjct 53666 GAAGGTATTCCTCCTGACCAACAGCGACTCATCTTCGCGGGAAAACAACTCGAAGACGGC 53725 Query 38403 CGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTG 38462 ||||| || | ||||||||||||||| ||||| | || || || |||| |||||||| Sbjct 53726 CGCACTCTGAGCGACTACAACATCCAGAAGGAGTCCACCCTTCACCTGGTCTTGCGTTTG 53785 Query 38463 AGAGGCGG 38470 | || || Sbjct 53786 CGTGGTGG 53793 >seq84 Length=171189 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 132916 CCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTT 132975 |||||||| | ||||| |||||||| |||||||| || ||||| | || |||||| Sbjct 164326 CCCTCGTCTCGCGAAATCAGTTCGTTTGAAAAAGTCAATCCAGGCATCAATCCTCGTTTT 164267 Query 132976 TTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAA 133035 || |||||||||||||| || || || || ||||| | ||||||||| ||| ||| Sbjct 164266 TTCAGCCAAAATATGGCTGCAAATGACCCAGAGAAGAAAATGCCCTCGACACACGCAAAA 164207 Query 133036 GCCACCAGGCG 133046 || |||| ||| Sbjct 164206 GCGACCAAGCG 164196 >seq77 Length=196091 Score = 86.0 bits (94), Expect = 6e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAA 38324 || ||||| || || |||||| | || |||||| || | |||| | | | | || Sbjct 17894 CTTACGGGTAAGACGATCACCCTTGAGGTCGAGTCCTCGGACACGATCGACAATGTCAAG 17835 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 || |||| ||||| ||||| || || ||||||||||||| ||||| | ||| ||| Sbjct 17834 TCCAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAACAGCGACTCATCTTCGCCGGC 17775 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 || ||||| || || | || ||| | ||||||||| ||||| ||||| Sbjct 17774 AAGCAGCTCGAGGATGGTCGTACCTTGTCCGACTACAATATCCAGAAGGA 17725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171855923840