Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq24 143 3e-29 seq1 134 2e-26 >seq24 Length=290538 Score = 143 bits (158), Expect = 3e-29 Identities = 183/247 (74%), Gaps = 10/247 (4%) Strand=Plus/Plus Query 102090 CTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 102149 || || ||||||||| | || | |||||||| |||||||| || | ||||| | ||| Sbjct 18929 CTATTCGAAGCCATCGACACTATCCCATGTATCCAAAAGAAGGCCAACTGGGCACTCAAG 18988 Query 102150 TGGTTTGAT-ACAAAGTCGCGTTCC---TTTGCTGAGCGACTCTTCGCATTTGCGTGTGT 102205 ||| | | || || || ||| |||||||||||| | |||| ||||| ||| Sbjct 18989 TGGATCTCTGACCAA----CGATCCACATTTGCTGAGCGATTGATCGCCTTTGCCGCTGT 19044 Query 102206 TGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTC 102264 |||||||||||||| || || || || |||| | || | ||||||||||| ||||| | Sbjct 19045 AGAGGGTATCTTCTTTTCAGGATCATT-TGCGTCCATCTTCTGGCTCAAGAAACGAGGAC 19103 Query 102265 TCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAG 102324 ||||||| ||||| ||||| |||||||| ||||| || |||||||| || ||| | Sbjct 19104 TCATGCCCGGTCTTACATTCTCAAACGAGCTCATCTCGCGAGACGAGGGTCTTCACACCG 19163 Query 102325 AGTTTGC 102331 | ||||| Sbjct 19164 ACTTTGC 19170 >seq1 Length=1646047 Score = 134 bits (148), Expect = 2e-26 Identities = 453/692 (65%), Gaps = 19/692 (3%) Strand=Plus/Minus Query 111726 CTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAG 111785 ||||||||||| |||||||| || |||||||| || ||||| | |||| || Sbjct 680039 CTCTTCAACGCCGGTACACCTCACCCTCAAATGTCGTCCTGCTTCCTCGTCGCAATGCAG 679980 Query 111786 GAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGG 111845 || || || ||| | || || |||| || |||| |||||| | ||||| ||| Sbjct 679979 GATGACTCGATCGACGGTATCTACGAGACCCTCAAGACTTGTGCCAAGATCTCCAAGACC 679920 Query 111846 GCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGT 111905 || ||||||||||| | |||||||| | || | || || ||| ||| ||| Sbjct 679919 GCAGGTGGTATCGGTCTCCACATCCACAACATCCGGGCAAAGGGCTCTTACATTGCCGGT 679860 Query 111906 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 111965 |||||||| | || | |||||| | || ||||| || | || | ||||| || || Sbjct 679859 ACAAATGGCTACTCCAACGGTATTGTGCCCATGCTCCGAGCCTTCGATGCCACCGCTCGT 679800 Query 111966 TATGTAAACCAAGCTGGGCGTC--GCAA--GGGATCTATCGCAGTCTATCTTGAGCCATG 112021 || || | |||| | ||| | || | ||| | | || | || || ||||| || Sbjct 679799 TACGTCGATCAAGGT-GGCAACAAGCGACCGGGTGCATTTGCCATTTACCTCGAGCCTTG 679741 Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCG 112081 ||| || ||| || | || ||||| || | || ||||| || | || |||| || Sbjct 679740 GCATGCCGATGTCTTTGACTTCCTCGACCTTCGCAAGAACCACGGCAAGGAAGAGGTCCG 679681 Query 112082 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGA--- 112138 ||| || || |||| ||| || ||||| ||||||| ||||||||| |||| || Sbjct 679680 CGCCCGAGACCTGTTCTACGCACTGTGGATCTCAGATCTTTTCATGAAGCGAGTCGAATC 679621 Query 112139 GGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCG 112197 || ||| ||||| || | | || || | || |||||||| ||||| |||| Sbjct 679620 TGACGGTG---ATTGGACTTTAATGTGCCCTGCAGAGTGCCCCGGTCTTTCCGACTGCC- 679565 Query 112198 TGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC-- 112255 || || |||||||| ||| ||| | ||||| |||| | | | | | || Sbjct 679564 ACGGCGAAGAGTTTGAGCGCCTGTACGAGAGCTACGA-GAAGGCTGGCAAGGGTC-GCAA 679507 Query 112256 GACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTA 112314 ||| | | || | || | | ||| || || ||| || | || |||||||| |||| Sbjct 679506 GACCAT-CAAGGCACAGAAGCTTTGGTTCGCCATCCTCGAGGCCCAGACCGAGACCGGTA 679448 Query 112315 CACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTG 112374 || | |||||||||||||||||| ||| || || ||| || | | || Sbjct 679447 ACCCCTTCATGCTTTACAAAGACGCCGCCAACGCCAAATCCAACCAACAGCACCTCGGGA 679388 Query 112375 TGATCAAGAGTTCCAACCTCTGTACAGAAATC 112406 ||||||| |||||||| || || || ||| Sbjct 679387 CGATCAAGTCATCCAACCTATGCACTGAGATC 679356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741228348720