Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq24 143 3e-29 seq67 116 4e-21 seq1 109 6e-19 >seq24 Length=290538 Score = 143 bits (158), Expect = 3e-29 Identities = 210/293 (72%), Gaps = 13/293 (4%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 ||||| || || || || ||||||||||| || ||| ||| || |||||||||||| Sbjct 19158 TGAAGACCCTCGTCTCGCGAGATGAGCTCGTTTGAGAATGTAAGACCGGGCATGAGTCCT 19099 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | |||||| ||||| ||||||| ||| ||| ||||||||||| ||||| ||| | Sbjct 19098 CGTTTCTTGAGCCAGAAGATGGACGCAAATGATCCTGAAAAGAAGATACCCTCTACAGCG 19039 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTT-GTC---GAACCACTTGAGAGC 119683 || || |||| | |||||||| ||| || || || ||| || ||||||||| || Sbjct 19038 GCAAAGGCGATCAATCGCTCAGC-AAATGTGGATCGTTGGTCAGAGATCCACTTGAGTGC 18980 Query 119684 CCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTT 119743 |||||||||||| | || || |||| ||| | |||||||||||| || | | Sbjct 18979 CCAGTTGGCCTTCTTTTGGATACATGGGATAGTGTCGATGGCTTCGAATAG----GTATG 18924 Query 119744 TTC----AGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCA 119792 ||| || |||| || || || | ||||| || ||||||||||||| Sbjct 18923 TTCGGCGGGCGGCATCTTTGATGTACGTGTCAATCAGGAGAGAGTAGGTCTCA 18871 >seq67 Length=225064 Score = 116 bits (128), Expect = 4e-21 Identities = 170/236 (72%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 11674 TTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733 ||||||| ||||| |||||||||||||| | ||| |||||| || ||| | | Sbjct 61511 TTACCGATCGCGTCGATCTCATCGATGAAGATGATGCACGGTGCGTGCTTCTTTGCGTTT 61452 Query 11734 TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCG 11793 |||| || || || || || || || ||||| ||||||||||| ||||| | | Sbjct 61451 GCGAACAGGTCTCGCACTCGAGACGGGCCGACACCGACGAACATCTCGACGAATTCCGAA 61392 Query 11794 GCAGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGT 11852 ||||| || || | ||| || || || ||||||||| ||||| ||||||||| || Sbjct 61391 CCAGAA-ACAGAGAGGAATGGGACGCCAGCTTCACCAGCGGTGGCTTTAGCGAGGAGGGT 61333 Query 11853 CTTACCCGTACCAGGTGCACCAGCGAGAAG--GGCGCCACGGGGGATCTTGGCACC 11906 ||||| |||||||| | || ||| ||| ||| || || ||||| |||||||| Sbjct 61332 TTTACCGGTACCAGGGGGTCC--CGACAAGATGGCACCTCGTGGGATTTTGGCACC 61279 >seq1 Length=1646047 Score = 109 bits (120), Expect = 6e-19 Identities = 279/420 (66%), Gaps = 11/420 (3%) Strand=Plus/Plus Query 110608 TCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGA 110667 || || | ||||||||| || || | ||||||| || |||| ||||| ||| || Sbjct 679624 TCGACTCGCTTCATGAAAAGATCTGAGATCCACAGTGCGTAGAACAGGTCTCGGGCGCGG 679683 Query 110668 GCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCAT 110727 ||||||| | || ||||| ||| || || | ||||| | || ||| | ||||| Sbjct 679684 ACCTCTTCCTTGCCGTGGTTCTTGCGAAGGTCGAGGAAGTCAAAGACATCGGCATGCCAA 679743 Query 110728 GGTTCGAGATAGACAGCGA-TGGATCC-----CTTACGACGACCCGCCTGGTTAACATAG 110781 || ||||| || | || | || | || ||| | ||| || | || || Sbjct 679744 GGCTCGAGGTAAATGGCAAATGCACCCGGTCGCTTGTTGCCACCT---TGATCGACGTAA 679800 Query 110782 CGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTA 110841 || || ||||||| |||| | | |||||| || | ||| || | ||| | ||||||||| Sbjct 679801 CGAGCGGTGGCATCGAAGGCTCGGAGCATGGGCACAATACCGTTGGAGTAGCCATTTGTA 679860 Query 110842 CCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCC 110901 || ||| || || || || |||| |||||| || | ||| |||||||| || Sbjct 679861 CCGGCAATGTAAGAGCCCTTTGCCCGGATGTTGTGGATGTGGAGACCGATACCACCTGCG 679920 Query 110902 CACTTACTAATTTGTGCAC-ACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGC 110960 ||| || | |||| | ||| |||| || | || ||||| || ||||| || | Sbjct 679921 GTCTTGGAGATCTTGGCACAAGTCT-TGAGGGTCTCGTAGATACCGTCGATCGAGTCATC 679979 Query 110961 CTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAG 111020 || | || | || ||||| || ||||| ||||| |||| || || || |||||||| Sbjct 679980 CTGCATTGCGACGAGGAAGCAGGACGACATTTGAGGGTGAGGTGTACCGGCGTTGAAGAG 680039 Score = 84.2 bits (92), Expect = 3e-11 Identities = 194/290 (67%), Gaps = 2/290 (1%) Strand=Plus/Plus Query 109376 TAAATTGGATTGGTCGAGCTTTCGCCTTCGAGCGAAGATAATA-CATACCCGTTTTGAGA 109434 |||| ||||||| | ||| | ||| | ||| || || || ||| || || |||||| Sbjct 678311 TAAACTGGATTGCCTGTGCTGAAGGCTTGGTGCGGAGGTAGTAGCAT-CCAGTCTTGAGA 678369 Query 109435 CCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATA 109494 || ||||||| |||| | ||||| || | ||||| ||||| | || | | | Sbjct 678370 CCCCTCTTCCATCCGTAGAAGTGCATCGAGGTGAGTTGGGAAAAGGATGGGTTGGCAAGG 678429 Query 109495 AACAAGTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATG 109554 | ||| | |||||||||||| ||||| || || || || || || | |||||| Sbjct 678430 TGGATGTTGAGCGACTGAGACTGGTCGATAAAGGCGCCTCGGTCTGCGGCGAGATCGATG 678489 Query 109555 ATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATG 109614 | | |||||| ||| |||||||| |||||||| | ||||| || | |||||| Sbjct 678490 ACAGCCTTTTGTGAAATCTCCCAGACGGTCTTGTAGATCGCCTTGAGCTCGGCAGGAATG 678549 Query 109615 TCCACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCAT 109664 || || || || || ||||| || | ||||||| |||||| Sbjct 678550 GAAGGAATATTCTGGATGGAACCACCGGCTGCAATGATGAGATTCTTCAT 678599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588974888307800