Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1 136 5e-27 seq24 120 4e-22 seq84 84.2 3e-11 >seq1 Length=1646047 Score = 136 bits (150), Expect = 5e-27 Identities = 481/747 (64%), Gaps = 11/747 (1%) Strand=Plus/Plus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 ||||| || | || ||||| ||||| || || |||||| | | |||||| | Sbjct 679297 GGAAGAGCAAGCGAGGCCAAGTTGCAGACTGCGACCTCATCTGGTGCAGAGTACTCAATG 679356 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || || | |||||| ||| |||||||| | | || |||||| || | Sbjct 679357 ATCTCAGTGCATAGGTTGGATGACTTGATCGTCCCGAGGTGCTGTTGGTTGGATTTGGCG 679416 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||| || || ||||| |||||| |||| | || ||||| ||||| | || ||| || Sbjct 679417 TTGGCGGCGTCTTTGTAAAGCATGAAGGGGTTACCGGTCTCGGTCTGGGCCTCGAGGATG 679476 Query 106637 GCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGG--CCCGTCCCT-CCGCCTCGTA 106692 || ||| | | || | | || | |||| ||| ||| | || || |||||| Sbjct 679477 GCGAACCAAAGCTTCTGTGCCTTG----ATGGTCTTGCGACCCTTGCCAGCCTTCTCGTA 679532 Query 106693 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTC 106752 | ||| ||| |||||||| || || |||||| ||||| || || | Sbjct 679533 GCTCTCGTACAGGCGCTCAAACTCTTCGCCGTGGCAGTCGGAAAGACCGGGGCACTCTGC 679592 Query 106753 TGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAAT 106812 || || | | || ||| | ||| | || || |||||||||||||| |||| || Sbjct 679593 AGGGCACATTAAAGTCCAATCACCGTCAGATTCGACTCGCTTCATGAAAAGATCTGAGAT 679652 Query 106813 CCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA 106872 |||||| | | || || |||| || ||||||| | || ||||| || | Sbjct 679653 CCACAGTGCGTAGAACAGGTCTCGGGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGAAG 679712 Query 106873 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTT 106932 || ||||| || | || ||| || ||||| ||||| || || | || | | ||| Sbjct 679713 GTCGAGGAAGTCAAAGACATCGGCATGCCAAGGCTCGAGGTAAATGGCAAATGCACCCGG 679772 Query 106933 TCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGG 106989 ||| ||| |||||| || || || || ||||| | || | || ||||| || Sbjct 679773 TCGCTTGTTGCCACCTTGATCGACGTAACGAGCGGTGGCATCGAAGGCTCGGAGCATGGG 679832 Query 106990 AATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATC 107049 | |||||| | || | |||||||| || ||| ||| || || | | | Sbjct 679833 CACAATACCGTTGGAGTAGCCATTTGTACCGGCAATGTAAGAGCCCTTTGCCCGGATGTT 679892 Query 107050 ATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGT 107109 |||||||| | || ||||| || || ||| ||||| | ||||| | | || || Sbjct 679893 GTGGATGTGGAGACCGATACCACCTGCGGTCTTGGAGATCTTGGCACAAGTCTTGAGGGT 679952 Query 107110 TCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTG 107169 | |||||||||| ||| ||||| |||| | |||| |||||||| ||||| || Sbjct 679953 CTCGTAGATACCGTCGATCGAGTCATCCTGCATTGCGACGAGGAAGCAGGACGACATTTG 680012 Query 107170 CGGTCTTGGTGTACCAGCATTGAAGAG 107196 || |||||||| || |||||||| Sbjct 680013 AGGGTGAGGTGTACCGGCGTTGAAGAG 680039 >seq24 Length=290538 Score = 120 bits (132), Expect = 4e-22 Identities = 178/245 (73%), Gaps = 8/245 (3%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| |||||||| ||||| || || || || |||||||| || || Sbjct 19170 GCAAAGTCGGTGTGAAGACCCTCGTCTCGCGAGATGAGCTCGTTTGAGAATGTAAGACCG 19111 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGAT 117392 |||||||| || || ||||| | ||| | || | |||| ||||| || || |||||||| Sbjct 19110 GGCATGAGTCCTCGTTTCTTGAGCCAGAAGATGGACGCA-AATGATCCTGAAAAGAAGAT 19052 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCA-- 117450 |||||| ||| ||||| || | | ||||| || || | | || | ||| |||| Sbjct 19051 ACCCTCTACAGCGGCAAAGGCGATCAATCGCTCAGCAAATGTG-GA-TCGTTG-GTCAGA 18995 Query 117451 -AACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTC 117509 | ||| || | |||||| || |||||||| | |||||||| | ||| | ||||||||| Sbjct 18994 GATCCACTTGAGTGCCCAGTTGGCCTTCTTTTGGATACATGGGATAGTGTCGATGGCTTC 18935 Query 117510 AAATA 117514 |||| Sbjct 18934 GAATA 18930 >seq84 Length=171189 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 ||||| ||||| ||||| ||||| ||||| || | || ||||| | || || || Sbjct 164326 CCCTCGTCTCGCGAAATCAGTTCGTTTGAAAAAGTCAATCCAGGCATCAATCCTCGTTTT 164267 Query 117352 TTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAA 117410 |||| |||| | || || ||| |||||||| |||||||| || ||||| ||||||||||| Sbjct 164266 TTCAGCCAAAATATGGCTGCA-AATGACCCAGAGAAGAAAATGCCCTCGACACACGCAAA 164208 Query 117411 CGC 117413 || Sbjct 164207 AGC 164205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979686411240