Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq77 147 5e-30 seq24 118 2e-21 >seq77 Length=196091 Score = 147 bits (162), Expect = 5e-30 Identities = 151/195 (77%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCT 194981 || ||||| || ||||| ||||||||||| || || |||||||| |||| |||| || | Sbjct 17698 AGCCTCAAGACGAGGTGGAGAGTGGACTCCTTCTGGATATTGTAGTCGGACAAG-GTACG 17756 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||||| ||||||||||| || |||||||| ||||| |||||||| || || || || || Sbjct 17757 ACCATCCTCGAGCTGCTTGCCGGCGAAGATGAGTCGCTGTTGGTCGGGTGGGATACCCTC 17816 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||| || || || |||||| || || || |||||||| || || |||||||| Sbjct 17817 CTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCAAGGGT 17876 Query 195102 AACCGTCTTTCCTGT 195116 | |||||| || || Sbjct 17877 GATCGTCTTACCCGT 17891 >seq24 Length=290538 Score = 118 bits (130), Expect = 2e-21 Identities = 133/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 194963 TGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTT 195022 |||| |||| ||| |||| || || || || ||||| || |||||||| | ||| |||| Sbjct 52912 TGTAGTCGGAAAGGGTTCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAATCGCTGTT 52853 Query 195023 GGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCG 195082 | || |||||||| || || ||||| || || || ||||||||| ||||||||||| | Sbjct 52852 GATCGGGAGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGG 52793 Query 195083 AACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || |||||||| | ||||| || || | ||||| ||||| | ||||| Sbjct 52792 ACGACTCAACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAGATCTGCAT 52735 Score = 116 bits (128), Expect = 8e-21 Identities = 118/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 194963 TGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTT 195022 |||| || | || |||| ||||| || ||||| || || |||||||| | ||| |||| Sbjct 52637 TGTAGTCTGAGAGGGTTCGGCCATCCTCAAGCTGTTTGCCGGCGAAGATCAATCGCTGTT 52578 Query 195023 GGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCG 195082 |||| |||||||| || || ||||| || || || ||||||||| ||||||||||||| Sbjct 52577 GGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCG 52518 Query 195083 AACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || ||| || || ||||| | ||||| || || Sbjct 52517 AAGATTCAACCTCGAGGGTGATAGTCTTGCCAGT 52484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109479453499817