Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20]
151 sequences; 19,786,307 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq24 118 1e-21
>seq24
Length=290538
Score = 118 bits (130), Expect = 1e-21
Identities = 180/254 (71%), Gaps = 2/254 (1%)
Strand=Plus/Minus
Query 18941 GAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCA 19000
|||| || | |||| | ||| ||||| || || || |||||||||| || |
Sbjct 19193 GAAGGTGGCTGAACAAGAGACAAGCAAAGTCGGTGTGAAGACCCTCGTCTCGCGAGATGA 19134
Query 19001 ATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAG 19060
|| || || ||||| | ||| ||||| ||||||| ||| || | |||||| || || |
Sbjct 19133 GCTCGTTTGAGAATGTAAGACCGGGCATGAGTCCTCGTTTCTTGAGCCAGAAGATGGACG 19074
Query 19061 CAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCAT 19120
|||||||||| |||||||| ||||| ||||| || ||||| || | | || || ||
Sbjct 19073 CAAATGATCCTGAAAAGAAGATACCCTCTACAGCGGCAAAGGCGATCAATCGCTCAGCA- 19015
Query 19121 AACTAGCATCATTATTATGA-ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACAT 19179
|| | ||| || | || ||||| || |||||||| | |||||||||| | ||||
Sbjct 19014 AATGTGGATCGTTGGTCAGAGATCCACTTGAGTGCCCAGTTGGCCTTCTTTTGGATACAT 18955
Query 19180 GGCATTGTCTCTAT 19193
|| || || || ||
Sbjct 18954 GGGATAGTGTCGAT 18941
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562107739019640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |