Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq24 118 1e-21 >seq24 Length=290538 Score = 118 bits (130), Expect = 1e-21 Identities = 180/254 (71%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 18941 GAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCA 19000 |||| || | |||| | ||| ||||| || || || |||||||||| || | Sbjct 19193 GAAGGTGGCTGAACAAGAGACAAGCAAAGTCGGTGTGAAGACCCTCGTCTCGCGAGATGA 19134 Query 19001 ATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAG 19060 || || || ||||| | ||| ||||| ||||||| ||| || | |||||| || || | Sbjct 19133 GCTCGTTTGAGAATGTAAGACCGGGCATGAGTCCTCGTTTCTTGAGCCAGAAGATGGACG 19074 Query 19061 CAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCAT 19120 |||||||||| |||||||| ||||| ||||| || ||||| || | | || || || Sbjct 19073 CAAATGATCCTGAAAAGAAGATACCCTCTACAGCGGCAAAGGCGATCAATCGCTCAGCA- 19015 Query 19121 AACTAGCATCATTATTATGA-ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACAT 19179 || | ||| || | || ||||| || |||||||| | |||||||||| | |||| Sbjct 19014 AATGTGGATCGTTGGTCAGAGATCCACTTGAGTGCCCAGTTGGCCTTCTTTTGGATACAT 18955 Query 19180 GGCATTGTCTCTAT 19193 || || || || || Sbjct 18954 GGGATAGTGTCGAT 18941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562107739019640