Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1 145 1e-29 seq24 109 1e-18 >seq1 Length=1646047 Score = 145 bits (160), Expect = 1e-29 Identities = 635/999 (64%), Gaps = 78/999 (8%) Strand=Plus/Plus Query 213185 CTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTC 213244 ||| | ||||||||||| || || | || ||||||| ||||||||| || || |||| Sbjct 678960 CTCTTCGGCCAGCTCGCTCGAGGCTTCGAGTGCAGCGTGGTAGATGGTCTCGAAGATCTG 679019 Query 213245 CCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCAT-CATCATGCGTTGGAACACAT 213303 ||||||||| | |||| |||| || ||| ||||| | |||| | ||| ||| Sbjct 679020 GATGTTGAGCTCCCTGGCGGCTGGTGAGTCGAAAGGCATGCGCAATGCCAT-GAAAGCAT 679078 Query 213304 CAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCAC 213362 | || || |||||||| || | || ||||||| ||| | || ||| || ||| |||| | Sbjct 679079 CTGCAAGACCCTGGACACCCAATCCTATGGGTCGGTGACGCATGTTGGAGTTGCGAGC-C 679137 Query 213363 TCCTCCAAGGGGTAAAAGTT-------------------------GCAGTCGATGAT--- 213394 || | |||||| |||| |||||| | ||| Sbjct 679138 TCAATAACGGGGTAGTAGTTTCGGTTGATCACCTGACAAATCAGCGCAGTCTAGGATTGT 679197 Query 213395 ---------CT-----TGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTAC 213440 || ||| ||||| |||| |||| |||| || | | || | | Sbjct 679198 AAATGCCAACTTACGGTGTCAAGGTTCTTGGTGACCACCTTGGCGATCTCGTGGAGCTTC 679257 Query 213441 T---CGTGATTGAACACGTAGC-CCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGC 213496 | || || | || ||| || || ||| || || |||| || || | ||| Sbjct 679258 TTGAAGTCATAG-ACTCGTCGCTCCATGTC---GACGAAGGCAGGAAGAGCAAGCGAGGC 679313 Query 213497 CAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTT 213556 || |||||| || || ||||| | | | | |||||| |||||||| ||||| ||||| Sbjct 679314 CAAGTTGCAGACTGCGACCTCATCTGGTGCAGAGTACTCAATGATCTCAGTGCATAGGTT 679373 Query 213557 GCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTA 213616 | | ||| || || |||| ||| ||||| || || |||||||| | || ||||| Sbjct 679374 GGATGACTTGATCGTCCCGAGGTGCTGTTGGTTGGATTTGGCGTTGGCGGCGTCTTTGTA 679433 Query 213617 GAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCT 213676 |||||| ||||| |||||||| ||||| | | || || | ||| || | | Sbjct 679434 AAGCATGAAGGGGTTACCGGTCTCGGTCTGGGCCTCGAGGATGGCGAACCAAAGCTTCTG 679493 Query 213677 GGCCTTGA--------CCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTA 213727 ||||||| | ||| | || |||| | |||||| ||||||| | | Sbjct 679494 TGCCTTGATGGTCTTGCGACC--CTTGCCAGC-CTTCTCGTAGCTCTCGTACAGGCGCTC 679550 Query 213728 GAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACAT 213787 | ||| | | ||||| ||| | | || || || || ||| || ||||| Sbjct 679551 AAACTCTTCG---CCGTGG---CAGTC---GGAAAGACCGGGGCACTCTGCAGGGCACAT 679601 Query 213788 GAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGC 213847 | |||| || |||||| | ||||| || |||||| || || | || |||||| || Sbjct 679602 TAAAGTCCAATCACCGTCAGATTCGACTCGCTTCATGAAAAGATCTGAGATCCACAGTGC 679661 Query 213848 GGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAA 213907 | ||||||||| | || | ||| ||| || ||| ||||| || || || || Sbjct 679662 GTAGAACAGGTCTCGGGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGAAGGTCGAGGAA 679721 Query 213908 GTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTT 213964 |||||||| || || ||||| ||||| | ||| |||||||| || |||| || | || Sbjct 679722 GTCAAAGACATCGGCATGCCAAGGCTCGAGGTAAATGGCAAATGCACCCGGTCGCTTGTT 679781 Query 213965 GCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCC 214024 ||| || || || || | || | |||| || || | ||| || | || Sbjct 679782 GCCACCTTGATCGACGTAACGAGCGGTGGCATCGAAGGCTCGGAGCATGGGCACAATACC 679841 Query 214025 GTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGA 214084 |||||| | || || || || || || || ||||| |||| | |||| ||| Sbjct 679842 GTTGGAGTAGCCATTTGTACCGGCAATGTAAGAGCCCTTTGCCCGGATGTTGTGGATGTG 679901 Query 214085 GAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCA 214123 ||| || || ||||| ||| |||||||||| |||| || Sbjct 679902 GAGACCGATACCACCTGCGGTCTTGGAGATCTTGGCACA 679940 >seq24 Length=290538 Score = 109 bits (120), Expect = 1e-18 Identities = 168/238 (71%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 || |||||||| |||| | || ||||| || ||||||| |||| ||||| ||| Sbjct 19173 CAAGCAAAGTCGGTGTGAAGACCCTCGTCTCGCGAGATGAGCTCGTTTGAGAATGTAAGA 19114 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||||| || | | ||||||||||| || | ||| || || || || |||||| Sbjct 19113 CCGGGCATGAGTCCTCGTTTCTTGAGCCAGAAGATGGACGCAAATGATCCTGAAAAGAAG 19054 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAA--AGAAGCGTTCTTGTCTG 48308 || ||||| || || || || ||| | | | ||| | || | | ||| | ||| | Sbjct 19053 ATACCCTCTACAGCGGCAAAGGCGATCAATCGCTCAGCAAATGTGGATCGT--TGGTCAG 18996 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 ||||||| || ||||||| |||||||| | ||| ||||| || || || ||||| Sbjct 18995 AGATCCACTTGAGTGCCCAGTTGGCCTTCTTTTGGATACATGGGATAGTGTCGATGGC 18938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931531041731840