Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq24 125 1e-23 seq1 120 6e-22 >seq24 Length=290538 Score = 125 bits (138), Expect = 1e-23 Identities = 180/244 (74%), Gaps = 10/244 (4%) Strand=Plus/Plus Query 25795 GCCATCGAGCACATACCCA-GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAA 25853 |||||||| ||| |||| | ||| | | |||||| ||||| | ||||||||| Sbjct 18938 GCCATCGA-CACTATCCCATGTATCCAAAAGAAGGCCAACTGGGCACTCAAGTGGATCTC 18996 Query 25854 CAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTT 25913 ||| | | || |||| ||||| || | |||||||| ||||| ||||| ||||| Sbjct 18997 TGACCAACGATCCACATTTGCTGAGCGATTGATCGCCTTTGCCGCTGTAGAGGGTATCTT 19056 Query 25914 --TTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGG 25970 |||||| | || |||||| ||||||||||||||||| | | | |||| ||||||||| Sbjct 19057 CTTTTCAG--GATCATTTGCGTCCATCTTCTGGCTCAAG-AAACGAGGACTCATGCCCGG 19113 Query 25971 GCTGTAC-TTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCT 26029 || ||| || || |||||||||||| | ||||||||||| |||| || ||||| | Sbjct 19114 TCT-TACATTCTCAAACGAGCTCATCTCGCGAGACGAGGGTCTTCACACCGACTTTGCTT 19172 Query 26030 GCCT 26033 | || Sbjct 19173 GTCT 19176 >seq1 Length=1646047 Score = 120 bits (132), Expect = 6e-22 Identities = 741/1186 (62%), Gaps = 56/1186 (5%) Strand=Plus/Plus Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTG--GTATACTGTATGATCTCTGTACAG 221770 ||||| ||| || || || ||||| || || || | |||| |||||||| || || Sbjct 679311 GGCCAAGTTGCAGACTGCGACCTCATC--TGGTGCAGAGTACTCAATGATCTCAGTGCAT 679368 Query 221771 AGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCC 221830 |||||| ||||||| ||||| ||||| | || || || ||| ||||| ||||| Sbjct 679369 AGGTTGGATGACTTGATCGTCCCGAGGTGCTGTTGGTTGGATTTGGCGTTGGCGGCGTCT 679428 Query 221831 TTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGT 221890 ||||| ||||| ||||| || ||||| ||| ||| | || || | ||| || Sbjct 679429 TTGTAAAGCATGAAGGGGTTACCGGTCTCGGTCTGGGCCTCGAGGATGGCGAACCAAAGC 679488 Query 221891 TCTCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCG---GTCTTTTCATACCCGGTATA 221946 | |||| || | | ||| ||| ||||| | | ||| || || | || Sbjct 679489 T-TCTGTGCCTTGATGGTC---TTGCG---ACCCTTGCCAGCCTTCTCGTAGCTCTCGTA 679541 Query 221947 GAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACAT 222006 || ||||||| ||| |||| ||| || || || ||| || || ||||| Sbjct 679542 CAGGCGCTCAAACTCTTCGCCGTGGCAGTCGGAAAGACCGGGGCACTCTGCAGGGCACAT 679601 Query 222007 CAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGC 222066 | | |||| | || || ||| | || |||||| || || | ||||||||| || Sbjct 679602 TAAAGTCCAATCACCGTCAGATTCGACTCGCTTCATGAAAAGATCTGAGATCCACAGTGC 679661 Query 222067 CTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAA 222126 | || || |||| || || ||| ||| ||||| ||| || | || || | || Sbjct 679662 GTAGAACAGGTCTCGGGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGAAGGTCGAGGAA 679721 Query 222127 CTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTT 222186 ||||| | || || ||||| ||||| || || | ||| | || || ||||||||||| Sbjct 679722 GTCAAAGACATCGGCATGCCAAGGCTCGAGGTAAATGGCAAATGCACCCGGTCGCTTGTT 679781 Query 222187 GCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCC 222246 |||||| ||||| || | | || | |||| || || | || || | || Sbjct 679782 GCCACCTTGATCGACGTAACGAGCGGTGGCATCGAAGGCTCGGAGCATGGGCACAATACC 679841 Query 222247 GTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG- 222305 |||||| || || || || |||||| | || |||| | ||| ||| | Sbjct 679842 GTTGGAGTAGCCATTTGTACCGGCAATGTAAGAGCCCTTTGCCCGGATGTT-GTGGATGT 679900 Query 222306 ACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGA 222365 | ||||||||||| ||| || |||||| |||| || ||||||| || || || Sbjct 679901 GGAGACCGATACCACCTGCGGTCTTGGAGATCTTGGCACAAGTCTTGAGGGTCTCGTAGA 679960 Query 222366 TGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGG 222425 | || || || ||||| |||| | | || || || |||||||| |||| | | Sbjct 679961 TACCGTCGATCGAGTCATCCTGCATTGCGACGAGGAAGCAGGACGACATTTGAGGGTGAG 680020 Query 222426 TGGAACAGGCGTTAAACAGC---------------------------------GTGGGAC 222452 | || |||||| || ||| || || Sbjct 680021 GTGTACCGGCGTTGAAGAGCTGACGTCAGATAGAACCAGATCAGTAACTCACAGTTGGGG 680080 Query 222453 TGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGT 222512 || || || ||||| | | ||||||||| ||| ||||| | || | | |||| Sbjct 680081 AAGCATGGGTGAAGTATCGCTCAGACATCAGGGTGTAGGTCTCGATAGCTTTTTCAATGT 680140 Query 222513 TGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCTCCACAGGAC 222572 || |||||||| ||||| | |||| ||||| || || | ||| ||| | Sbjct 680141 TGGATCCGTGAATACCGATGGCCACACGCATGATCATGTGTTGTGGTCGCTCAACA--AT 680198 Query 222573 CCT--TGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAG 222630 | | | | || ||| ||||| ||| || || |||||||| |||||||||||| Sbjct 680199 CTTGCCGTTGATGCGGAGTAGGTAAGATCGCTCGAGGGTCTTGAATCCAAAGTAGTTGTA 680258 Query 222631 GTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCAGCTCCGACTTGTGCTTTACGCTCAA 222690 ||||||||| | ||| | | ||| | ||| |||| | ||||| | | | | Sbjct 680259 AGCAAAGTCTCGGTCGTAGATGATGGCAGAGTCGAGCTGCTCCTTGTTGTCCATGACGAC 680318 Query 222691 CTCGAAAAAGCGCTCAGACACGAGGGGAGCGTTCTCTTTGGTGTCGGGGTTAACGTTGTG 222750 | ||| | | || | | | ||| || | || | ||| | |||||| || ||| Sbjct 680319 TTTGAAGACGTCATCGGCGATCATGGGCGCATGCTTTCCGGTCTTGGGGTTGACCCAGTG 680378 Query 222751 GTACAGCTGCCACATGGCATCAGAGAACG-TGTCGGGAGTCTGCTTGTGCAGATTCGACA 222809 ||| || | | | | || ||||| | | || | |||| |||||| ||||| || | Sbjct 680379 GTAGAGATCAGAGACGACAGAGGAGAAGGATTTCTTG-GTCTCCTTGTGGAGATTTGAAA 680437 Query 222810 CGGCGATCCGAGACGCCAAGATACCATAGTCAGGGTGCACGGTGGT 222855 |||||| |||| |||| || |||| || |||||| |||||| Sbjct 680438 TGGCGATACGAGCAGCCAGAATGGCATAATCTGGGTGCTTGGTGGT 680483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843046805440