Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq50 114 8e-20 >seq50 Length=5760 Score = 114 bits (126), Expect = 8e-20 Identities = 160/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 474656 TCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATA 474714 ||||| ||| |||| || || |||||| | | ||| ||||| | ||||| ||| |||| Sbjct 5414 TCACCAGAAGAAATCTCCTCTATGGTTCTCGTCAAGATGAAGGAGACCGCAGAGG-CATA 5356 Query 474715 TCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCA 474774 ||||| || || | || || | |||||||| || || || || || ||||| Sbjct 5355 CCTTGGTGGTACTGTCACCAAGGCCGTTGTCACTGTTCCCGCCTACTTCAACGACTCTCA 5296 Query 474775 ACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAA 474834 ||||||||||| || || || |||| ||||| |||||| | || | ||||| ||||| Sbjct 5295 GCGTCAAGCAACCAAGGACGCAGGAACCATTGCTGGTCTTGACGTCCTCCGTATCATTAA 5236 Query 474835 TGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 ||||| || || ||||| | || || ||||| || ||||| Sbjct 5235 CGAACCCACTGCCGCCGCCATCGCATACGGTCTCGACAAGAA 5194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268172722877348