Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq24 120 4e-22 seq1 118 1e-21 seq84 84.2 3e-11 >seq24 Length=290538 Score = 120 bits (132), Expect = 4e-22 Identities = 178/245 (73%), Gaps = 8/245 (3%) Strand=Plus/Plus Query 64988 TATTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAAT 65047 |||| ||||||||| | ||| | |||||||| | |||||||| || |||||| | || | Sbjct 18930 TATTCGAAGCCATCGACACTATCCCATGTATCCAAAAGAAGGCCAACTGGGCACTCAAGT 18989 Query 65048 GGTT---TGACACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGG 65104 || | |||| ||| | || | | || || ||||| | | || ||||| ||| | Sbjct 18990 GGATCTCTGAC-CAACGA-TC-CACATTTGCTGAGCGATTGATCGCCTTTGCCGCTGTAG 19046 Query 65105 AGGGTATCTTCTTCTCCGGGTCATTCTGCG-CTATTTATTGGTTGAAGAAGCGGGGTCTC 65163 ||||||||||||| || || ||||| |||| | || | ||| | ||||| || || ||| Sbjct 19047 AGGGTATCTTCTTTTCAGGATCATT-TGCGTCCATCTTCTGGCTCAAGAAACGAGGACTC 19105 Query 65164 ATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAG 65223 ||||| || || |||||||| || || || || ||||| |||||||| ||| || Sbjct 19106 ATGCCCGGTCTTACATTCTCAAACGAGCTCATCTCGCGAGACGAGGGTCTTCACACCGAC 19165 Query 65224 TTTGC 65228 ||||| Sbjct 19166 TTTGC 19170 >seq1 Length=1646047 Score = 118 bits (130), Expect = 1e-21 Identities = 482/751 (64%), Gaps = 19/751 (3%) Strand=Plus/Minus Query 75326 CTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAG 75385 |||||||| || |||||||| || || ||||| |||||||| |||| | || Sbjct 680039 CTCTTCAACGCCGGTACACCTCACCCTCAAATGTCGTCCTGCTTCCTCGTCGCAATGCAG 679980 Query 75386 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 75445 || ||||| ||| |||||||||| | || || | | ||||| | ||||| ||| Sbjct 679979 GATGACTCGATCGACGGTATCTACGAGACCCTCAAGACTTGTGCCAAGATCTCCAAGACC 679920 Query 75446 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 75505 || || ||||| || | |||||||| | | | || || ||| ||| || Sbjct 679919 GCAGGTGGTATCGGTCTCCACATCCACAACATCCGGGCAAAGGGCTCTTACATTGCCGGT 679860 Query 75506 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 75565 |||||||| | || | |||||| | || ||||| || | || | ||||| || || Sbjct 679859 ACAAATGGCTACTCCAACGGTATTGTGCCCATGCTCCGAGCCTTCGATGCCACCGCTCGT 679800 Query 75566 TATGTAAATCAAGCGGGGCGTC--GCAAG-GGGTCCATC-GCGGTCTACTTGGAACCATG 75621 || || |||||| | ||| | || | |||| ||| || | ||| | || || || Sbjct 679799 TACGTCGATCAAG-GTGGCAACAAGCGACCGGGTGCATTTGCCATTTACCTCGAGCCTTG 679741 Query 75622 GCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCG 75681 |||||||||| || | || ||||| || | || ||||| || | ||||||| || Sbjct 679740 GCATGCCGATGTCTTTGACTTCCTCGACCTTCGCAAGAACCACGGCAAGGAAGAGGTCCG 679681 Query 75682 GTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGA 75741 |||| || || | | |||||||| |||| |||||||||||||| || || Sbjct 679680 CGCCCGAGACCTGTTCTACGCACTGTGGATCTCAGATCTTTTCATGAAGCGAGTCGAATC 679621 Query 75742 GGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGG 75801 | ||| | ||| || | | || || | || || ||||| |||||| || Sbjct 679620 TGACGGTGATTGGACTTTAATGTGCCCTGCAGAGTGCCCCGGTCTTTCCGACTGCCACGG 679561 Query 75802 TGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG------AGGGTAGAGCCAATGC 75855 || |||||||| ||| ||| | || || ||| ||||| | ||| Sbjct 679560 CGAAGAGTTTGAGCGCCTGTACGAGAGCTACGAGAAGGCTGGCAAGGGTCG---CAA--- 679507 Query 75856 GACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAA 75914 ||| | | || | | || | ||||| || || ||| | | ||||| ||||| || | Sbjct 679506 GACCAT-CAAGGCACAGAAGCTTTGGTTCGCCATCCTCGAGGCCCAGACCGAGACCGGTA 679448 Query 75915 CACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAA 75974 || | ||||||||||| || || ||| || |||||| || | | || | Sbjct 679447 ACCCCTTCATGCTTTACAAAGACGCCGCCAACGCCAAATCCAACCAACAGCACCTCGGGA 679388 Query 75975 CAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGG 76034 | |||||| || || || ||||| || || | |||||| | | |||||| | Sbjct 679387 CGATCAAGTCATCCAACCTATGCACTGAGATCATTGAGTACTCTGCACCAGATGAGGTCG 679328 Query 76035 CTGTTTGCAATTTGGCATCAATCGCCCTTCC 76065 | || ||||| ||||| || | || ||||| Sbjct 679327 CAGTCTGCAACTTGGCCTCGCTTGCTCTTCC 679297 >seq84 Length=171189 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 65089 GCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTATTTATTGGTT 65147 || ||||||||||| ||||| || |||||||| |||||||| ||| || || | |||| | Sbjct 164205 GCTTTTGCGTGTGTCGAGGGCATTTTCTTCTCTGGGTCATT-TGCAGCCATATTTTGGCT 164263 Query 65148 GAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGA 65207 ||| || || || | ||||| || | || ||||| ||||| ||||| ||||| || Sbjct 164264 GAAAAAACGAGGATTGATGCCTGGATTGACTTTTTCAAACGAACTGATTTCGCGAGACGA 164323 Query 65208 GGG 65210 ||| Sbjct 164324 GGG 164326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596568473974880