Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq24 87.8 5e-12 >seq24 Length=290538 Score = 87.8 bits (96), Expect = 5e-12 Identities = 215/319 (67%), Gaps = 8/319 (3%) Strand=Plus/Plus Query 133342 GGAAAATATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGT 133401 |||||| ||||| ||| || || ||| || ||||| || |||||||||||| ||| Sbjct 18856 GGAAAACATCCACTCTGAGACCTACTCTCTCCTGATTGACACGTACATCAAAGATGCCG- 18914 Query 133402 CCAGAAGCACA-AACTATTCAACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTG 133460 || | | ||| | |||||| | ||||| | | || ||||| ||||||| | Sbjct 18915 CCCGCCGAACATACCTATTCGAAGCCATCGACACTATCCCATGTATCCAAAAGAAGGCCA 18974 Query 133461 ACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTT 133520 ||||||| | || |||||| ||| | || | | |||||| || | | || | Sbjct 18975 ACTGGGCACTCAAGTGGATCTCTGACCAACGATCCACATTTGCTGAGCGATTGATCGCCT 19034 Query 133521 TTGCTGTAGTAGAGGGCA--tttttttCAGTGGTGCGTTCTGC-TCTATTTTTTGGCTTA 133577 |||| | |||||||| | || |||||| || | || ||| || || || ||||| | Sbjct 19035 TTGCCGCTGTAGAGGGTATCTTCTTTTCA--GGATCATT-TGCGTCCATCTTCTGGCTCA 19091 Query 133578 AAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGG 133637 | || || || | | || || || || || ||||| || || || | ||||||| Sbjct 19092 AGAAACGAGGACTCATGCCCGGTCTTACATTCTCAAACGAGCTCATCTCGCGAGACGAGG 19151 Query 133638 CACTTCACACCGAATTTGC 133656 ||||||||||| ||||| Sbjct 19152 GTCTTCACACCGACTTTGC 19170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471814752492887