Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20]
151 sequences; 19,786,307 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq1 131 2e-24
seq24 109 7e-18
>seq1
Length=1646047
Score = 131 bits (144), Expect = 2e-24
Identities = 180/252 (71%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125
|| |||||||| || || ||| | | ||| | |||||||||||||| | ||||||||
Sbjct 679789 TGATCGACGTAACGAGCGGTGGCATCGAAGGCTCGGAGCATGGGCACAATACCGTTGGAG 679848
Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185
| ||| || || || || | ||| | ||| || || | ||||| | | |||
Sbjct 679849 TAGCCATTTGTACCGGCAATGTAAGAGCCCTTTGCCCGGATGTTGTGGATGTGGAGACCG 679908
Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245
|| || || || | ||||||||| || || ||||| || |||||||| || |||
Sbjct 679909 ATACCACCTGCGGTCTTGGAGATCTTGGCACAAGTCTTGAGGGTCTCGTAGATACCGTCG 679968
Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305
|||||||| ||| ||| | ||||| ||||| ||||| |||| ||||| | || |||
Sbjct 679969 ATCGAGTCATCCTGCATTGCGACGAGGAAGCAGGACGACATTTGAGGGTGAGGTGTACCG 680028
Query 1630306 GCGTTGAAGAGC 1630317
||||||||||||
Sbjct 680029 GCGTTGAAGAGC 680040
Score = 96.9 bits (106), Expect = 4e-14
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524
||||||||||||| || ||||| || || ||| ||| ||||||||||||||||| |
Sbjct 679652 TCCACAGTGCGTAGAACAGGTCTCGGGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGAA 679711
Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 1628584
||||||| |||| | | ||||| ||||| ||||| ||||| |||||| || |||
Sbjct 679712 GGTCGAGGAAGTCAAAGACATCGGCATGCCAAGGCTCGAGGTAAATGGCAAATGCACCCG 679771
Query 1628585 TGCGCTTGCCGCCGCC 1628600
|||||| ||| ||
Sbjct 679772 GTCGCTTGTTGCCACC 679787
>seq24
Length=290538
Score = 109 bits (120), Expect = 7e-18
Identities = 181/257 (70%), Gaps = 21/257 (8%)
Strand=Plus/Minus
Query 869216 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAA 869274
|| ||||||||||| || || ||||||||||| ||||||| |||| || || || ||
Sbjct 19116 AGACCGGGCATGAGTCCTCGTTTCTTGAGCCAGAAGATGGACGCA-AATGATCCTGAAAA 19058
Query 869275 AAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTC 869334
||||| ||||| || ||||||||| |||| | ||||| ||||| ||| || ||
Sbjct 19057 GAAGATACCCTCTACAGCGGCAAAGGCGATCAATCGCTCAGCAAA--TGTGGA-----TC 19005
Query 869335 CTTGTT----GATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGT 869390
||| | ||||||||| | ||||||| |||||| || | | || | ||||
Sbjct 19004 GTTGGTCAGAGATCCACTTGAGTGCCCAGTTGGCCTTCTTTTGGATACATGGGATAGTGT 18945
Query 869391 CGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGG----GTCCTTGACATAGGTGTCGATC 869446
||||||| || |||| | |||||| || || |||| || ||||| |||
Sbjct 18944 CGATGGCTTCGAATAGGT----ATGTTCGGCGGGCGGCATCTTTGATGTACGTGTCAATC 18889
Query 869447 AGGAGCGAATAGGTCTC 869463
||||| || ||||||||
Sbjct 18888 AGGAGAGAGTAGGTCTC 18872
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107126808232867
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |