Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1 131 2e-24 seq24 109 7e-18 >seq1 Length=1646047 Score = 131 bits (144), Expect = 2e-24 Identities = 180/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 || |||||||| || || ||| | | ||| | |||||||||||||| | |||||||| Sbjct 679789 TGATCGACGTAACGAGCGGTGGCATCGAAGGCTCGGAGCATGGGCACAATACCGTTGGAG 679848 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | ||| || || || || | ||| | ||| || || | ||||| | | ||| Sbjct 679849 TAGCCATTTGTACCGGCAATGTAAGAGCCCTTTGCCCGGATGTTGTGGATGTGGAGACCG 679908 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || || || | ||||||||| || || ||||| || |||||||| || ||| Sbjct 679909 ATACCACCTGCGGTCTTGGAGATCTTGGCACAAGTCTTGAGGGTCTCGTAGATACCGTCG 679968 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 |||||||| ||| ||| | ||||| ||||| ||||| |||| ||||| | || ||| Sbjct 679969 ATCGAGTCATCCTGCATTGCGACGAGGAAGCAGGACGACATTTGAGGGTGAGGTGTACCG 680028 Query 1630306 GCGTTGAAGAGC 1630317 |||||||||||| Sbjct 680029 GCGTTGAAGAGC 680040 Score = 96.9 bits (106), Expect = 4e-14 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524 ||||||||||||| || ||||| || || ||| ||| ||||||||||||||||| | Sbjct 679652 TCCACAGTGCGTAGAACAGGTCTCGGGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGAA 679711 Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 1628584 ||||||| |||| | | ||||| ||||| ||||| ||||| |||||| || ||| Sbjct 679712 GGTCGAGGAAGTCAAAGACATCGGCATGCCAAGGCTCGAGGTAAATGGCAAATGCACCCG 679771 Query 1628585 TGCGCTTGCCGCCGCC 1628600 |||||| ||| || Sbjct 679772 GTCGCTTGTTGCCACC 679787 >seq24 Length=290538 Score = 109 bits (120), Expect = 7e-18 Identities = 181/257 (70%), Gaps = 21/257 (8%) Strand=Plus/Minus Query 869216 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAA 869274 || ||||||||||| || || ||||||||||| ||||||| |||| || || || || Sbjct 19116 AGACCGGGCATGAGTCCTCGTTTCTTGAGCCAGAAGATGGACGCA-AATGATCCTGAAAA 19058 Query 869275 AAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTC 869334 ||||| ||||| || ||||||||| |||| | ||||| ||||| ||| || || Sbjct 19057 GAAGATACCCTCTACAGCGGCAAAGGCGATCAATCGCTCAGCAAA--TGTGGA-----TC 19005 Query 869335 CTTGTT----GATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGT 869390 ||| | ||||||||| | ||||||| |||||| || | | || | |||| Sbjct 19004 GTTGGTCAGAGATCCACTTGAGTGCCCAGTTGGCCTTCTTTTGGATACATGGGATAGTGT 18945 Query 869391 CGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGG----GTCCTTGACATAGGTGTCGATC 869446 ||||||| || |||| | |||||| || || |||| || ||||| ||| Sbjct 18944 CGATGGCTTCGAATAGGT----ATGTTCGGCGGGCGGCATCTTTGATGTACGTGTCAATC 18889 Query 869447 AGGAGCGAATAGGTCTC 869463 ||||| || |||||||| Sbjct 18888 AGGAGAGAGTAGGTCTC 18872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107126808232867