Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1 122 1e-21 >seq1 Length=1646047 Score = 122 bits (134), Expect = 1e-21 Identities = 178/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 || ||||| || || || ||| | | ||| | |||||||||||||||| |||||||| Sbjct 679789 TGATCGACGTAACGAGCGGTGGCATCGAAGGCTCGGAGCATGGGCACAATACCGTTGGAG 679848 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | ||| || || || || | ||| | |||| || || | ||||| | | ||| Sbjct 679849 TAGCCATTTGTACCGGCAATGTAAGAGCCCTTTGCCCGGATGTTGTGGATGTGGAGACCG 679908 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || || || || | ||||||||| || || | || || ||||||||||| || ||| Sbjct 679909 ATACCACCTGCGGTCTTGGAGATCTTGGCACAAGTCTTGAGGGTCTCGTAGATACCGTCG 679968 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 |||||||| ||| ||| | | || ||||| ||||| |||| ||| | | || ||| Sbjct 679969 ATCGAGTCATCCTGCATTGCGACGAGGAAGCAGGACGACATTTGAGGGTGAGGTGTACCG 680028 Query 2073781 GCATTGAAGAGC 2073792 || ||||||||| Sbjct 680029 GCGTTGAAGAGC 680040 Score = 102 bits (112), Expect = 1e-15 Identities = 283/437 (65%), Gaps = 10/437 (2%) Strand=Plus/Plus Query 2071581 GACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTCAG 2071640 || ||| ||||| ||||||| ||| | | || || |||| ||| |||||| | Sbjct 679356 GATCTCAGTGCATAGGTTGGATGACTTGATCGTCCCGAGGTGCTGTTGGTTGGATTTGGC 679415 Query 2071641 GTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACGAT 2071700 |||| ||||||| |||| |||||| |||| ||| |||||| |||| ||| || ||| Sbjct 679416 GTTGGCGGCGTCTTTGTAAAGCATGAAGGGGTTACCGGTCTCGGTCTGGGCCTCGAGGAT 679475 Query 2071701 GGCCGACCAAA-----TTTGGCGCGCGGGCACCGAGGTCCTCGCGCGGCCCTNNNNNNNN 2071755 ||| |||||| | || | | || | | ||| || | ||| | Sbjct 679476 GGCGAACCAAAGCTTCTGTGCCTTGATGGTCTTGCGACCCTTGC-CAGCCTTCTCGTAGC 679534 Query 2071756 NNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTCG 2071815 | ||| ||||| | |||||||||| ||| || ||||| ||| Sbjct 679535 TCTCGT----ACAGGCGCTCAAACTCTTCGCCGTGGCAGTCGGAAAGACCGGGGCACTCT 679590 Query 2071816 GACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCAC 2071875 | ||||| | | | ||| || ||| ||| | || || ||| || || || | Sbjct 679591 GCAGGGCACATTAAAGTCCAATCACCGTCAGATTCGACTCGCTTCATGAAAAGATCTGAG 679650 Query 2071876 GTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTC 2071935 ||||||| |||| || || || || || ||| ||| ||||||||||||||||| Sbjct 679651 ATCCACAGTGCGTAGAACAGGTCTCGGGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGA 679710 Query 2071936 AGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCC 2071995 |||||||| |||| | || ||||| ||||| ||||| ||||| |||||| || ||| Sbjct 679711 AGGTCGAGGAAGTCAAAGACATCGGCATGCCAAGGCTCGAGGTAAATGGCAAATGCACCC 679770 Query 2071996 TTGCGCTTGCCGCCGCC 2072012 |||||| ||| || Sbjct 679771 GGTCGCTTGTTGCCACC 679787 Score = 95.1 bits (104), Expect = 2e-13 Identities = 168/238 (71%), Gaps = 8/238 (3%) Strand=Plus/Plus Query 2069253 GTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTA-CATGCCGG 2069311 ||||| ||||||||||| || | || | |||| |||||| || ||||| ||| || | Sbjct 678303 GTCGATAGTAAACTGGATTGCCTGTGCTGAAGGCTTGGTGCGGAGGTAGTAGCAT-CCAG 678361 Query 2069312 TCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGA--TGGACTCGGCATTCGG 2069369 ||||||| || | ||| ||||| ||||||||| |||| ||| | || || Sbjct 678362 TCTTGAGACCCCTCTTCCATCCGTAGAAGTGCATCGAGGTGAGTTGGGAAAAGGAT--GG 678419 Query 2069370 GACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCCGC 2069429 | |||| || || |||||||||||| |||||||| | ||| | ||||| || || Sbjct 678420 GTTGGCAAGGTGGATGTTGAGCGACTGAGACTGGTCGATAAAGGCGCCTCGGTCTGCGGC 678479 Query 2069430 CATGTCGATGGTCACGCGGTTG-GACACCTCCCACACGGTCTTGAACAGGGCCTTGAG 2069486 | ||||| | || | ||| || | |||||| ||||||||| | | |||||||| Sbjct 678480 GAGATCGAT-GACAGCCTTTTGTGAAATCTCCCAGACGGTCTTGTAGATCGCCTTGAG 678536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916230337441289