Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq77 104 2e-17 seq24 95.1 8e-15 >seq77 Length=196091 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || | || ||||| ||| ||||| | ||| ||||||||| || || ||||| || Sbjct 17689 CCACCTCGCAGCCTCAAGACGAGGTGGAGAGTGGACTCCTTCTGGATATTGTAGTCGGAC 17748 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | | | || |||| || || ||||| ||||||||||| ||||| || ||||| | || Sbjct 17749 AAGGTACGACCATCCTCGAGCTGCTTGCCGGCGAAGATGAGTCGCTGTTGGTCGGGTGGG 17808 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || ||||| | |||| || || |||||| Sbjct 17809 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACC 17868 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGG 34957 |||| ||| || ||||| ||||| ||| Sbjct 17869 TCAAGGGTGATCGTCTTACCCGTAAGG 17895 >seq24 Length=290538 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | || |||||||| || || ||||| || || | || | || Sbjct 53221 AGGACAAGGTGGAGAGTCGATTCCTTCTGGATATTGTAGTCGGAGAGCGTTCGGCCGTCT 53162 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||| || || ||||| || | || | ||||||||||| Sbjct 53161 TCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCC 53102 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||||| | || | || | ||||| |||| || || ||| Sbjct 53101 TGGATCTTCGCTTTGACGTTGTCAATGGTATCGGACGATTCGACCTCAAGCGTGATAGTC 53042 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || ||||||||||| ||||| ||||| Sbjct 53041 TTGCCGGTAAGGGTCTTTACGAAGATTTGCAT 53010 Score = 87.8 bits (96), Expect = 1e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 34802 TAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGG 34861 ||||| || ||| | || | || || |||||||| ||||||||||||| ||| || || Sbjct 52910 TAGTCGGAAAGGGTTCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGA 52851 Query 34862 TCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTG 34921 || | || | ||||||||||| | || || |||||| | || | || Sbjct 52850 TCGGGAGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAC 52791 Query 34922 GCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | ||| || |||| ||| |||||||| || || ||||| || || ||||||||||| Sbjct 52790 GACTCAACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAGATCTGCAT 52735 Score = 84.2 bits (92), Expect = 1e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||| ||||| | |||| ||| ||||||||||| ||||| || ||| | || |||| Sbjct 53499 CAAGACGAGGTGCAAGGTGGACTCTTTCTGAATGTTGTAGTCAGACAGGGTTCGGCCATC 53440 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 || | ||||||||||||||| ||||| || || ||||| Sbjct 53439 CTCTAATTGCTTTCCGGCGAAAATCAGACGCTGTTGGTC 53401 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || | ||| | || ||||||||||| |||| ||||||||| ||||| ||||| Sbjct 53793 CCACCACGCAAACGCAAGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 53734 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 || |||| | || || ||||| ||||| |||||||| ||||| || ||||| Sbjct 53733 AGAGTGCGGCCGTCTTCGAGTTGTTTTCCCGCGAAGATGAGTCGCTGTTGGTC 53681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692200623469