Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq50 122 7e-22 >seq50 Length=5760 Score = 122 bits (134), Expect = 7e-22 Identities = 223/325 (69%), Gaps = 10/325 (3%) Strand=Plus/Plus Query 282152 TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCC 282211 |||| |||||| || | |||| | | || || || || ||||| || ||||| ||| Sbjct 5014 TTTCGCTTGAACTCCTGAACAAAGTGGTTGACGAGTCGGTTGTCAAAGTCCTCACCACCC 5073 Query 282212 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 282271 || | ||| | |||| || || | || | ||| | || || || | | ||||||| Sbjct 5074 AAGTGAGTGTCACCTGCAGTGGCCTTGACCTCGAAGATACCCTCATCGATGGTCAAAAGA 5133 Query 282272 GTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCT-----TTGT 282326 | ||||| ||| ||||| |||| || || || || || || || || |||| Sbjct 5134 GACACATCGAAGGTACCACCTCCCAAGTCGAAGATGAGGACGTT--TTGCTCGCCCTTGT 5191 Query 282327 CTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCA 282386 ||| | || || ||||| || || | || || ||||| ||||| ||||| || | | Sbjct 5192 CTT---TCTTGTCGAGACCGTATGCGATGGCGGCGGCAGTGGGTTCGTTAATGATACGGA 5248 Query 282387 AAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAA 282446 || | |||||||||||| ||||||| || || || ||||| | || || ||||| | Sbjct 5249 GGACGTCAAGACCAGCAATGGTTCCTGCGTCCTTGGTTGCTTGACGCTGAGAGTCGTTGA 5308 Query 282447 AATATGCAGGAACAGTAATAACGGC 282471 | || || |||||||| | |||||| Sbjct 5309 AGTAGGCGGGAACAGTGACAACGGC 5333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740622986538126