Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq77 114 1e-20 seq24 104 2e-17 seq1 95.1 1e-14 >seq77 Length=196091 Score = 114 bits (126), Expect = 1e-20 Identities = 133/177 (75%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| |||||||| ||| || || ||| | ||||||||||||||||| Sbjct 17719 GTGGACTCCTTCTGGATATTGTAGTCGGACAAGGTACGACCA-TCCTCGAGCTGCTTGCC 17777 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| ||||| |||||||| ||||| || |||||||| |||||| ||| Sbjct 17778 GGCGAAGATGAGTCGCTGTTGGTCGGGTGGGATACCCTCCTTGTCCTGGATCTTGGACTT 17837 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAG 133639 || | || | |||||| | || ||| || || | ||||| || || || || || Sbjct 17838 GACATTGTCGATCGTGTCCGAGGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAG 17894 >seq24 Length=290538 Score = 104 bits (114), Expect = 2e-17 Identities = 155/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 || || |||||||| ||||| || |||||||| ||||| || |||||||| || || Sbjct 19176 AGACAAGCAAAGTCGGTGTGAAGACCCTCGTCTCGCGAGATGAGCTCGTTTGAGAATGTA 19117 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759 || |||||||||| ||| |||||| |||| |||| ||||| || |||||| Sbjct 19116 AGACCGGGCATGAGTCCTCGTTTCTTGAGCCAGAAGATGGACGCAAATGATCCTGAAAAG 19057 Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCG-CCGTCTTGCT 120818 || | ||||| || ||||||||||| || ||||| || || || | || ||| Sbjct 19056 AAGATACCCTCTACAGCGGCAAAGGCGATCAATCGCTCAGCAAATGTGGATCG--TTG-- 19001 Query 120819 GTC---GATCCACTTCATGGCCCACTCGGCCTTTTT 120851 ||| ||||||||| | ||||| | |||||| || Sbjct 19000 GTCAGAGATCCACTTGAGTGCCCAGTTGGCCTTCTT 18965 Score = 102 bits (112), Expect = 8e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 || || || ||||| |||||||| ||| | ||| || || || || |||||||||| Sbjct 53206 GTCGATTCCTTCTGGATATTGTAGTCGGAGAGCGTTCGGCCG--TCTTCAAGCTGCTTGC 53149 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||| |||||||| || || ||||| || |||||||| |||||| | Sbjct 53148 CGGCGAAGATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCCTGGATCTTCGCTT 53089 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| || |||| | || || || | |||| || |||||||| || | Sbjct 53088 TGACGTTGTCAATGGTATCGGACGATTCGACCTCAAGCGTGATAGTCTTGCCGGTAAGGG 53029 Query 133642 TTTTTACGAAAATCTGCAT 133660 | |||||||| || ||||| Sbjct 53028 TCTTTACGAAGATTTGCAT 53010 >seq1 Length=1646047 Score = 95.1 bits (104), Expect = 1e-14 Identities = 459/719 (64%), Gaps = 27/719 (4%) Strand=Plus/Plus Query 148827 GAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCAC 148886 ||||| | ||||| || || |||||| || || |||||| | |||||| | ||| Sbjct 679309 GAGGCCAAGTTGCAGACTGCGACCTCATCTGGTGCAGAGTACTCAATGATCTCAGTGCAT 679368 Query 148887 AGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCC 148946 || ||| | |||||| || | || || ||| ||| ||| |||| ||||| Sbjct 679369 AGGTTGGATGACTTGATCGTCCCGAGGTGCTGTTGGTTGGATTTGGCGTTGGCGGCGTCT 679428 Query 148947 TTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG---AACCGATGC 149003 ||||| |||||| | || || || || ||| | || | ||| |||| | || Sbjct 679429 TTGTAAAGCATGAAGGGGTTACCGGTCTCGGTCTGGGCCTCGAGGATGGCGAACCAAAGC 679488 Query 149004 AGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCT------CCTGCTCGTATAAAGTA 149057 | ||| || |||| || || | |||||||| ||| |||||| Sbjct 679489 ---TTCTGTGC-----CTTGATGGTCTT-GCGACCCTTGCCAGCCTTCTCGTAGCTCTCG 679539 Query 149058 TACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGC-GGGCA 149116 ||||| ||||| ||| | ||||||| ||| ||| |||||||||||| | ||| ||||| Sbjct 679540 TACAGGCGCTCAAACTCTTCGCCGTGGCAGTCGGAAAGACCGGGGCAC-TCTGCAGGGCA 679598 Query 149117 CATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAG 149176 ||| | | ||| | ||||| | | || |||||||| || ||||| | | ||| || Sbjct 679599 CATTAAAGTCCAATCACCGTCAGATTCGACTCGCTTCATGAAAAGATCTGAGATCCACAG 679658 Query 149177 CGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAG 149236 ||||| | ||||| || || | ||||| ||| ||| ||| |||| ||| Sbjct 679659 TGCGTAGAACAGGTCTCGGGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGAAGGTCGAG 679718 Query 149237 CACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC-- 149294 | | || | || || ||||| ||||| | ||| | || | || ||| ||| Sbjct 679719 GAAGTCAAAGACATCGGCATGCCAAGGCTCGAGGTAAATGGCAAATGCACCCGGTCGCTT 679778 Query 149295 -TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAAT 149353 ||||| || || ||||||| || | || | || |||| | ||| || |||| Sbjct 679779 GTTGCCACCTTGATCGACGTAACGAGCGGTGGCATCGAAGGCTCGGAGCATGGGCACAAT 679838 Query 149354 GCCACTGGCAGT-GCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCA 149412 || ||| ||| ||| || ||| | |||| | ||| || || | ||||| | Sbjct 679839 ACCGTTGG-AGTAGCCATTTGTACCGGCAATGTAAGAGCCCTTTGCCCGGATGTTGTGGA 679897 Query 149413 CGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGC-AGTCGCCGAGCGTCGAG 149471 || || ||||| || || || ||| ||||| || | |||| ||| ||| | Sbjct 679898 TGTGGAGACCGATACCACCTGCGGTCTTGGAGATCTTGGCACAAGTC-TTGAGGGTCTCG 679956 Query 149472 TAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGG 149530 ||||| || ||||| ||| || ||| | | || ||||| || ||||||| || Sbjct 679957 TAGATACCGTCGATCGAGTCATCCTGCATTGCGACGAGGAAGCAGGACGACATTTGAGG 680015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483419887543240