Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq24 134 2e-25 seq1 111 2e-18 >seq24 Length=290538 Score = 134 bits (148), Expect = 2e-25 Identities = 196/269 (73%), Gaps = 15/269 (6%) Strand=Plus/Plus Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA-CCCGGT 1456073 ||||||||||||||||| |||||||| |||||||| ||||| ||| |||| || ||| Sbjct 18857 GAAAACATCCACTCTGAGACCTACTCTCTCCTGATTGACACGTACATCAAAGATGCCGCC 18916 Query 1456074 CGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGA 1456133 || | | |||| || ||||||||||| | || | | || |||||| | Sbjct 18917 CGCCGAACA-TACCTATTCGAAGCCATCGACACTATCCCATGTATCCAAAAGAAGGCCAA 18975 Query 1456134 CTGGGCGATGAAGTGGATC----AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGT 1456189 |||||| | ||||||||| | ||| || || ||| ||||| ||||| | | Sbjct 18976 CTGGGCACTCAAGTGGATCTCTGACCAACGA-----TCCACA-TTTGCTGAGCGATTGAT 19029 Query 1456190 CGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCATCTTTTGGC 1456247 || ||||||||| || ||||| ||||| || || || | | |||| ||||||| |||| Sbjct 19030 CGCCTTTGCCGCTGTAGAGGGTATCTTCTTTTCAGG-ATCATTTGCGTCCATCTTCTGGC 19088 Query 1456248 TCAAGAAGCGCGGCCTCATGCCCGGTCTT 1456276 ||||||| || || ||||||||||||||| Sbjct 19089 TCAAGAAACGAGGACTCATGCCCGGTCTT 19117 >seq1 Length=1646047 Score = 111 bits (122), Expect = 2e-18 Identities = 178/254 (70%), Gaps = 4/254 (2%) Strand=Plus/Minus Query 259930 GCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAA 259989 |||||| || ||||| || || | ||| || | ||||| ||||| || | | ||| | Sbjct 680040 GCTCTTCAACGCCGGTACACCTCACCCTCAAATGTCGTCCTGCTTCCTCGTCGCAATGCA 679981 Query 259990 GGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGC 260049 || || |||||||| || ||||| || || |||||| || || ||||||||| | Sbjct 679980 GGATGACTCGATCGACGGTATCTACGAGACCCTCAAGACTTGTGCCAAGATCTCCAAGAC 679921 Query 260050 GGCCGGCGGCATCGGTTTTGCCGCA--CACAAGGTGCGCGCCGCGGGCGCCTACGTGGCG 260107 || || || |||||| | || || ||||| | || || |||| | ||| | || Sbjct 679920 CGCAGGTGGTATCGGTCT--CCACATCCACAACATCCGGGCAAAGGGCTCTTACATTGCC 679863 Query 260108 GGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCG 260167 || || || ||| | |||||||| ||||||||||||| || | || | | ||| || Sbjct 679862 GGTACAAATGGCTACTCCAACGGTATTGTGCCCATGCTCCGAGCCTTCGATGCCACCGCT 679803 Query 260168 CGCTACGTCGACCA 260181 || |||||||| || Sbjct 679802 CGTTACGTCGATCA 679789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177796635772462