Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq24 113 5e-20 >seq24 Length=290538 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| | ||| | || ||||| || || |||||||| || || ||||||||| Sbjct 53236 CCACCTCGCAATCGAAGGACAAGGTGGAGAGTCGATTCCTTCTGGATATTGTAGTCGGAG 53177 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| || ||||| ||||| || || || | |||||||||||| || || Sbjct 53176 AGCGTTCGGCCGTCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCAGGTGGG 53117 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || |||||| ||| | || ||||||||||| || Sbjct 53116 ATACCCTCCTTGTCCTGGATCTTCGCTTTGACGTTGTCAATGGTATCGGACGATTCGACC 53057 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || ||||| | || || ||||| |||||||| Sbjct 53056 TCAAGCGTGATAGTCTTGCCGGTAAGGGTCTTTACGAAGATTTGCAT 53010 Score = 96.9 bits (106), Expect = 4e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 134536 TGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCT 134595 |||||||| || ||| | ||| || || || ||||| || || ||||| ||||| | Sbjct 52912 TGTAGTCGGAAAGGGTTCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAATCGCTGTT 52853 Query 134596 GATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGG 134655 ||||||| || || || || || || || || || ||||| ||| | ||||||| Sbjct 52852 GATCGGGAGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGG 52793 Query 134656 ACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||| || || || || || ||||| || ||||| | ||||| ||||| || ||||| Sbjct 52792 ACGACTCAACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAGATCTGCAT 52735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505397446060520