Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq24 93.3 6e-14 seq84 91.5 2e-13 >seq24 Length=290538 Score = 93.3 bits (102), Expect = 6e-14 Identities = 141/197 (72%), Gaps = 9/197 (5%) Strand=Plus/Minus Query 39659 TCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA 39718 ||||| || ||||| || || ||||| || || || || |||||||| || |||| ||| Sbjct 19131 TCGTTTGAGAATGTAAGACCGGGCATGAGTCCTCGTTTCTTGAGCCAGAAGATGGACGCA 19072 Query 39719 AAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGC-AACAAGTCTCTCTCCGTA 39777 || ||||| ||||||||||| || ||||| || ||||| || | ||| || ||| | | Sbjct 19071 AATGATCCTGAAAAGAAGATACCCTCTACAGCGGCAAAGGCGATCAA---TCGCTCAGCA 19015 Query 39778 ACT-TGTATCATT----ATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAA 39832 | | || ||| || | |||||||| ||||||| | || ||||| | | ||| Sbjct 19014 AATGTGGATCGTTGGTCAGAGATCCACTTGAGTGCCCAGTTGGCCTTCTTTTGGATACAT 18955 Query 39833 GGCATTGTTTCTATAGC 39849 || || || || || || Sbjct 18954 GGGATAGTGTCGATGGC 18938 >seq84 Length=171189 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 39638 CCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTT 39697 ||||| |||| ||| | |||||| ||||| || | ||||||||| | || || ||| Sbjct 164326 CCCTCGTCTCGCGAAATCAGTTCGTTTGAAAAAGTCAATCCAGGCATCAATCCTCGTTTT 164267 Query 39698 TTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTAC 39747 || |||||||||||||| ||||| || ||||| ||||| ||||| || || Sbjct 164266 TTCAGCCAAAATATGGCTGCAAATGACCCAGAGAAGAAAATGCCCTCGAC 164217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686907503459640