Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq84 109 4e-19 seq24 96.9 3e-15 >seq84 Length=171189 Score = 109 bits (120), Expect = 4e-19 Identities = 93/115 (81%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 44124 GAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGG 44183 ||| ||| | ||||| ||||| ||| || ||||||||||| || || || ||||| | Sbjct 164191 GAGTACGCTTGGTCGCTTTTGCGTGTGTCGAGGGCATTTTCTTCTCTGGGTCATTTGCAG 164250 Query 44184 CCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238 ||||||||||| | || |||||||| ||||||||||| ||||| |||||||| || Sbjct 164251 CCATATTTTGGCTGAAAAAACGAGGATTGATGCCTGGATTGACTTTTTCAAACGA 164305 >seq24 Length=290538 Score = 96.9 bits (106), Expect = 3e-15 Identities = 221/327 (68%), Gaps = 8/327 (2%) Strand=Plus/Plus Query 43967 GAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGG-GCA 44025 ||||| || || || || | ||| ||| ||||| || |||||||||||||||| || Sbjct 18857 GAAAACATCCACTCTGAGACCTACTCTCTCCTGATTGACACGTACATCAAAGATGCCGCC 18916 Query 44026 CGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGA 44085 || | ||| | | || || || || || | || || || | || || | Sbjct 18917 CGCCGAACATACCTATTCGAA-GCCATCGACACTATCCCATGTATCCAAAAGAAGGCCAA 18975 Query 44086 CTGGGCCCTTAAATGGATAAATT-CAAATGATTCT--TTTGGAGAACGACTTGTCGCGTT 44142 |||||| || || ||||| | | || ||| | |||| || ||| | |||| || Sbjct 18976 CTGGGCACTCAAGTGGATCTCTGACCAACGATCCACATTTGCTGAGCGATTGATCGCCTT 19035 Query 44143 TGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAA 44202 ||| | ||| || || || |||||||||||||| |||||| |||| || ||| | ||||| Sbjct 19036 TGCCGCTGTAGAGGGTATCTTCTTTTCAGGATCATTTGCGTCCATCTTCTGGCTCAAGAA 19095 Query 44203 ACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTT 44262 |||||| | ||||| || | || || ||||| ||| | || || || || || | Sbjct 19096 ACGAGGACTCATGCCCGGTCTTACATTCTCAAACGAGCTCATCTCGCGAGACGAGGGTCT 19155 Query 44263 ACATTGCGATTTTGCTTG---CTTGTT 44286 || ||| |||||||| |||||| Sbjct 19156 TCACACCGACTTTGCTTGTCTCTTGTT 19182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455268556755