Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 140 4e-28 seq24 118 1e-21 seq84 84.2 3e-11 >seq1 Length=1646047 Score = 140 bits (154), Expect = 4e-28 Identities = 482/747 (65%), Gaps = 11/747 (1%) Strand=Plus/Plus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 ||||| || | || ||||| ||||| || || |||||| | | |||||| | Sbjct 679297 GGAAGAGCAAGCGAGGCCAAGTTGCAGACTGCGACCTCATCTGGTGCAGAGTACTCAATG 679356 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || || |||| |||||| ||| |||||||| | | || |||||| || | Sbjct 679357 ATCTCAGTGCATAGGTTGGATGACTTGATCGTCCCGAGGTGCTGTTGGTTGGATTTGGCG 679416 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||| || || ||||| |||||| |||| | || ||||| ||||| | | ||| || Sbjct 679417 TTGGCGGCGTCTTTGTAAAGCATGAAGGGGTTACCGGTCTCGGTCTGGGCCTCGAGGATG 679476 Query 111410 GCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTTGG--CCCGTCCCT-CCGCCTCGTA 111465 || ||||| | || | | || | |||| ||| ||| | || || |||||| Sbjct 679477 GCGAACCAAAGCTTCTGTGCCTTG----ATGGTCTTGCGACCCTTGCCAGCCTTCTCGTA 679532 Query 111466 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTC 111525 | ||| ||| |||||||| || || |||||| ||||| || || | Sbjct 679533 GCTCTCGTACAGGCGCTCAAACTCTTCGCCGTGGCAGTCGGAAAGACCGGGGCACTCTGC 679592 Query 111526 TGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAAT 111585 || || | | || ||| | ||| | || || |||||||||||||| |||| || Sbjct 679593 AGGGCACATTAAAGTCCAATCACCGTCAGATTCGACTCGCTTCATGAAAAGATCTGAGAT 679652 Query 111586 CCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA 111645 |||||| | | || || |||| || ||||||| | || ||||| || | Sbjct 679653 CCACAGTGCGTAGAACAGGTCTCGGGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGAAG 679712 Query 111646 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTT 111705 || ||||| || | || ||| || ||||| ||||| || || | || | | ||| Sbjct 679713 GTCGAGGAAGTCAAAGACATCGGCATGCCAAGGCTCGAGGTAAATGGCAAATGCACCCGG 679772 Query 111706 TCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGG 111762 ||| ||| |||||| || || || || ||||| | || | || ||||| || Sbjct 679773 TCGCTTGTTGCCACCTTGATCGACGTAACGAGCGGTGGCATCGAAGGCTCGGAGCATGGG 679832 Query 111763 AATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATC 111822 | |||||| | || | |||||||| || ||| ||| || || | | | Sbjct 679833 CACAATACCGTTGGAGTAGCCATTTGTACCGGCAATGTAAGAGCCCTTTGCCCGGATGTT 679892 Query 111823 ATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGT 111882 |||||||| | || ||||| || || ||| ||||| | ||||| | | || || Sbjct 679893 GTGGATGTGGAGACCGATACCACCTGCGGTCTTGGAGATCTTGGCACAAGTCTTGAGGGT 679952 Query 111883 TCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTG 111942 | |||||||||| ||| ||||| |||| | |||| |||||||| ||||| || Sbjct 679953 CTCGTAGATACCGTCGATCGAGTCATCCTGCATTGCGACGAGGAAGCAGGACGACATTTG 680012 Query 111943 CGGTCTTGGTGTACCAGCATTGAAGAG 111969 || |||||||| || |||||||| Sbjct 680013 AGGGTGAGGTGTACCGGCGTTGAAGAG 680039 >seq24 Length=290538 Score = 118 bits (130), Expect = 1e-21 Identities = 175/243 (72%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| |||||||| ||||| || || || || |||||||| ||||| Sbjct 19170 GCAAAGTCGGTGTGAAGACCCTCGTCTCGCGAGATGAGCTCGTTTGAGAATGTAAGACCG 19111 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGAT 122777 |||||||| || || ||||| | ||| | || | |||| ||||| || || |||||||| Sbjct 19110 GGCATGAGTCCTCGTTTCTTGAGCCAGAAGATGGACGCA-AATGATCCTGAAAAGAAGAT 19052 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAA 122836 |||||| ||| ||||| || | | || || || || | | || || | || | Sbjct 19051 ACCCTCTACAGCGGCAAAGGCGATCAATCGCTCAGCAAATGTG-GATCGTTGGTCAGAGA 18993 Query 122837 ACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAA 122896 ||| || | |||||| || |||||||| | |||||||| | ||| | ||||||||| | Sbjct 18992 TCCACTTGAGTGCCCAGTTGGCCTTCTTTTGGATACATGGGATAGTGTCGATGGCTTCGA 18933 Query 122897 ATA 122899 ||| Sbjct 18932 ATA 18930 >seq84 Length=171189 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 ||||| ||||| ||||| ||||| ||||| || | || ||||| | || || || Sbjct 164326 CCCTCGTCTCGCGAAATCAGTTCGTTTGAAAAAGTCAATCCAGGCATCAATCCTCGTTTT 164267 Query 122737 TTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAA 122795 |||| |||| | || || ||| |||||||| |||||||| || ||||| ||||||||||| Sbjct 164266 TTCAGCCAAAATATGGCTGCA-AATGACCCAGAGAAGAAAATGCCCTCGACACACGCAAA 164208 Query 122796 CGC 122798 || Sbjct 164207 AGC 164205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030814589600