Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1 176 6e-39 seq24 114 2e-20 seq130 86.0 8e-12 >seq1 Length=1646047 Score = 176 bits (194), Expect = 6e-39 Identities = 544/832 (65%), Gaps = 25/832 (3%) Strand=Plus/Plus Query 118626 AGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAA-ACTGCGAGT 118684 || || |||||||| ||||| | ||| || || ||||| | | | ||| | ||| || Sbjct 679219 AGGTTCTTGGTGACCACCTTGGCGATCTCGTGGAGCTTCTTGAAGTCATAGACTC---GT 679275 Query 118685 CTCTTCATT--GACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCA 118742 | || ||| ||| | |||||| || | || |||| || || || | | |||| Sbjct 679276 CGCTCCATGTCGACGAAGGCAGGAAGAGCAAGCGAGGCCAAGTTGCAGACTGCGACCTCA 679335 Query 118743 TCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAG 118802 || ||| |||||| || || || ||||| | ||| || ||| || || || | | Sbjct 679336 TCTGGTGCAGAGTACTCAATGATCTCAGTGCATAGGTTGGATGACTTGATCGTCCCGAGG 679395 Query 118803 TTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTC 118862 | || ||| || || || | ||| || || |||||||||||| | || | || ||| Sbjct 679396 TGCTGTTGGTTGGATTTGGCGTTGGCGGCGTCTTTGTAAAGCATGAAGGGGTTACCGGTC 679455 Query 118863 TCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGG- 118920 || || |||| || ||| || || ||| | | || | || | ||| ||| Sbjct 679456 TCGGTCTGGGCCTCGAGGATGGCGAACCAAAGCTTCTGTGCCTTGA----TGGTCTTGCG 679511 Query 118921 ---CTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCT 118977 || ||| |||| ||||| | ||| ||| ||||||||||| || | | Sbjct 679512 ACCCTTGCCAGCCTTC-TCGTAGCTCTCGTACAGGCGCTCAAACTCTTCGCCGTGGCAGT 679570 Query 118978 CTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCC 119037 | || || || || || | ||||| | | || ||| | ||| | || || | Sbjct 679571 CGGAAAGACCGGGGCACTCTGCAGGGCACATTAAAGTCCAATCACCGTCAGATTCGACTC 679630 Query 119038 GCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTT 119097 |||||||||| || |||| |||||| || || |||| || || || ||| | |||| Sbjct 679631 GCTTCATGAAAAGATCTGAGATCCACAGTGCGTAGAACAGGTCTCGGGCGCGGACCTCTT 679690 Query 119098 CATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCA 119157 | | || || || || | || | ||||| | || ||| || ||||| || || | Sbjct 679691 CCTTGCCGTGGTTCTTGCGAAGGTCGAGGAAGTCAAAGACATCGGCATGCCAAGGCTCGA 679750 Query 119158 GGTACACCGCGATTG-ACCC-----CTTACGACGACCAGCCTGGTTTACATACCTCGCAG 119211 |||| | || | || |||| ||| | | ||| | || | || || | || | Sbjct 679751 GGTAAATGGCAAATGCACCCGGTCGCTT--GTTG-CCACCTTGATCGACGTAACGAGCGG 679807 Query 119212 TGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAA 119271 |||| | || | || ||||| || | ||||| | ||| | ||||||||| || || Sbjct 679808 TGGCATCGAAGGCTCGGAGCATGGGCACAATACCGTTGGAGTAGCCATTTGTACCGGCAA 679867 Query 119272 TACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTG 119331 | ||| || || | || | ||||||||| | ||| ||||| ||||| ||| | Sbjct 679868 TGTAAGAGCCCTTTGCCCGGATGTTGTGGATGTGGAGACCGATACCACCTGCGGTCTTGG 679927 Query 119332 AGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTG 119391 |||| | || || | |||| | ||||||| || |||||||||||| ||| ||| Sbjct 679928 AGATCTTGGCACAAGTCTTGAGGGTCTCGTAGATACCGTCGATCGAGTCATCCTGCATTG 679987 Query 119392 CGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAG 119443 ||| |||||||||| |||||||||||| |||||||| ||||||||||| Sbjct 679988 CGACGAGGAAGCAGGACGACATTTGAGGGTGAGGTGTACCGGCGTTGAAGAG 680039 >seq24 Length=290538 Score = 114 bits (126), Expect = 2e-20 Identities = 174/245 (71%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| ||||||||||| || |||||||| || || ||||| ||||| Sbjct 19170 GCAAAGTCGGTGTGAAGACCCTCGTCTCGCGAGATGAGCTCGTTTGAGAATGTAAGACCG 19111 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 |||||||| || || ||||| | |||||| || | |||||| || || |||||||| Sbjct 19110 GGCATGAGTCCTCGTTTCTTGAGCCAGAAGATGGACGCAAATGATCCTGAAAAGAAGATA 19051 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCA--- 130192 ||||| ||| || || || | | ||||||||||| | || | ||| ||| Sbjct 19050 CCCTCTACAGCGGCAAAGGCGATCAATCGCTCAGCAAA--TGTGGATCGTTG-GTCAGAG 18994 Query 130193 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCA 130252 | |||||| | ||||| | ||||| || | |||||| |||| || | ||| ||||| Sbjct 18993 ATCCACTTGAGTGCCCAGTTGGCCTTCTTTTGGATACATGGGATAGTGTCGATGGCTTCG 18934 Query 130253 AAGAG 130257 || || Sbjct 18933 AATAG 18929 >seq130 Length=370431 Score = 86.0 bits (94), Expect = 8e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 179179 TCACCGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCATC 179238 || || |||||||| |||| ||| || | ||||||| | | ||||||||||||||| ||| Sbjct 97853 TCCCCATGATGGTATGCCGTCTTTTCTGACACATATCCAGTCAACTGCGCCACCTTGATC 97912 Query 179239 TCATCCTTGAGGTTCTTGTGGAAGCACGCATACATCACCTTTCTTTGTGAAGGCTTGAGG 179298 || | |||| ||| | |||||| || ||| ||| |||| ||| ||||| || Sbjct 97913 TCCTTTGTGAGATTCCGCTTGAAGCAACCAAACAACACTTTTCGTTGACCGGGCTTCAGA 97972 Query 179299 CCGTCGGCCA 179308 ||||| |||| Sbjct 97973 CCGTCAGCCA 97982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434032703560