Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq24 140 4e-28 >seq24 Length=290538 Score = 140 bits (154), Expect = 4e-28 Identities = 182/247 (74%), Gaps = 10/247 (4%) Strand=Plus/Plus Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773 || || ||||||||| | || | || ||||| |||||||| || | ||||| | ||| Sbjct 18929 CTATTCGAAGCCATCGACACTATCCCATGTATCCAAAAGAAGGCCAACTGGGCACTCAAG 18988 Query 94774 TGGTTTGAT-ACAAAGTCGCGTTCC---TTTGCTGAGCGACTCTTCGCATTTGCGTGTGT 94829 ||| | | || || || ||| |||||||||||| | |||| ||||| ||| Sbjct 18989 TGGATCTCTGACCAA----CGATCCACATTTGCTGAGCGATTGATCGCCTTTGCCGCTGT 19044 Query 94830 TGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTC 94888 |||||||||||||| || || || || |||| | || | ||||||||||| ||||| | Sbjct 19045 AGAGGGTATCTTCTTTTCAGGATCATT-TGCGTCCATCTTCTGGCTCAAGAAACGAGGAC 19103 Query 94889 TCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAG 94948 ||||||| ||||| ||||| |||||||| ||||| || |||||||| || ||| | Sbjct 19104 TCATGCCCGGTCTTACATTCTCAAACGAGCTCATCTCGCGAGACGAGGGTCTTCACACCG 19163 Query 94949 AGTTTGC 94955 | ||||| Sbjct 19164 ACTTTGC 19170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259699095240