Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq50 161 3e-34 seq24 159 1e-33 seq84 87.8 5e-12 >seq50 Length=5760 Score = 161 bits (178), Expect = 3e-34 Identities = 276/399 (69%), Gaps = 6/399 (2%) Strand=Plus/Minus Query 349531 ACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTT 349590 ||| |||||||| || || |||||| | || || |||||||| | || || ||||| | Sbjct 5412 ACCAGAAGAAATCTCCTCTATGGTTCTCGTCAAGATGAAGGAGACCGCAGAGGCATACCT 5353 Query 349591 AGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCG 349650 |||| || || || | || ||| | ||||| || ||||| || || || | ||||| Sbjct 5352 TGGTGGTACTGTCACCAAGGCCGTTGTCACTGTTCCCGCCTACTTCAACGACTCTCAGCG 5293 Query 349651 TTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGA 349710 | ||||| || || || || | |||||| || | | || || | || ||||| || Sbjct 5292 TCAAGCAACCAAGGACGCAGGAACCATTGCTGGTCTTGACGTCCTCCGTATCATTAACGA 5233 Query 349711 ACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCA---AGaaaaaaa 349767 ||||||||| || || || ||||| || || || || || ||| | || |||| Sbjct 5232 ACCCACTGCCGCCGCCATCGCATACGGTCTCGACAA---GAAAGACAAGGGCGAGCAAAA 5176 Query 349768 TATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGA 349827 | || || || || || || |||||||| || ||||| || || | || | || || Sbjct 5175 CGTCCTCATCTTCGACTTGGGAGGTGGTACCTTCGATGTGTCTCTTTTGACCATCGATGA 5116 Query 349828 GGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 ||| || || || || || || ||||| ||||| || || | ||||| || || ||||| Sbjct 5115 GGGTATCTTCGAGGTCAAGGCCACTGCAGGTGACACTCACTTGGGTGGTGAGGACTTTGA 5056 Query 349888 TAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCG 349926 || || ||||| || |||||| | || || ||||| Sbjct 5055 CAACCGACTCGTCAACCACTTTGTTCAGGAGTTCAAGCG 5017 >seq24 Length=290538 Score = 159 bits (176), Expect = 1e-33 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || |||| || ||||| || ||||| || || || || ||||| || || Sbjct 53240 CATACCACCTCGCAATCGAAGGACAAGGTGGAGAGTCGATTCCTTCTGGATATTGTAGTC 53181 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| || |||||||| || || || || ||||| ||||| ||||||||||| Sbjct 53180 GGAGAGCGTTCGGCCGTCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCAGG 53121 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || ||||| || || ||||| | ||| || | ||| Sbjct 53120 TGGGATACCCTCCTTGTCCTGGATCTTCGCTTTGACGTTGTCAATGGTATCGGACGATTC 53061 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| ||||| || || ||||| || || ||||| Sbjct 53060 GACCTCAAGCGTGATAGTCTTGCCGGTAAGGGTCTTTACGAAGATTTGCAT 53010 Score = 84.2 bits (92), Expect = 7e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||||| ||||||||| || | | || || ||||| || ||||| || || || || | Sbjct 53801 TTTACTGACCACCACGCAAACGCAAGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGT 53742 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | || || || ||||| ||||||||||| || ||||| || || || || | Sbjct 53741 AGTCGCTCAGAGTGCGGCCGTCTTCGAGTTGTTTTCCCGCGAAGATGAGTCGCTGTTGGT 53682 Query 140623 CAGGAGGAATTCCTTC 140638 |||||||||| ||||| Sbjct 53681 CAGGAGGAATACCTTC 53666 >seq84 Length=171189 Score = 87.8 bits (96), Expect = 5e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 223722 CCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCTTTT 223781 |||| |||| || || | ||| |||||||| || ||||||||||| || |||| |||| Sbjct 164325 CCTCGTCTCGCGAAATCAGTTCGTTTGAAAAAGTCAATCCAGGCATCAATCCTCGTTTTT 164266 Query 223782 TCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAAACG 223841 ||| ||||||||| || ||| | || || || || || || || ||||| ||||| | Sbjct 164265 TCAGCCAAAATATGGCTGCAAATGACCCAGAGAAGAAAATGCCCTCGACACACGCAAAAG 164206 Query 223842 CTACTAATCGT 223852 | || || ||| Sbjct 164205 CGACCAAGCGT 164195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515251468456253