Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1 242 4e-59 seq84 86.0 7e-12 seq24 82.4 8e-11 >seq1 Length=1646047 Score = 242 bits (268), Expect = 4e-59 Identities = 504/743 (68%), Gaps = 18/743 (2%) Strand=Plus/Plus Query 79054 AGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTG 79113 ||||| |||| |||||| || || ||| || || ||| ||| ||||| || ||| Sbjct 679306 AGCGAGGCCAAGTTGCAGACTGCGACCTCATCTGGTGCAGAGTACTCAATGATCTCAGTG 679365 Query 79114 CACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCG 79173 || | || || |||||||| || |||| || || |||||| || |||| |||| Sbjct 679366 CATAGGTTGGATGACTTGATCGTCCCGAGGTGCTGTTGGTTGGATTTGGCGTTGGCGGCG 679425 Query 79174 TCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAG 79233 || ||||| |||| | || | |||||||| ||| || ||| | | || ||| Sbjct 679426 TCTTTGTAAAGCATGAAGGGGTTACCGGTCTCGGTCTGGGCCTCGAGGATGGCGAACCAA 679485 Query 79234 ATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGA-------CGTACGTCCG 79286 | | | | ||| || ||||| ||||||| ||| | |||| || Sbjct 679486 AGCTTCTGTGCCTTGATGG---TCTTG---CGACCCT-TGCCAGCCTTCTCGTAGCTCTC 679538 Query 79287 GTACAACTCGTTGAAAGCCTCCCCATAGACA-TCGGGCAGGCCCGGGCACTCGTGC-GGG 79344 ||||| || | ||| || | | | || |||| || || |||||||| ||| ||| Sbjct 679539 GTACAGG-CGCTCAAACTCTTCGCCGTGGCAGTCGGAAAGACCGGGGCACTC-TGCAGGG 679596 Query 79345 CACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCAC 79404 ||||| | ||| || |||| || || || |||||| || || | ||||||| Sbjct 679597 CACATTAAAGTCCAATCACCGTCAGATTCGACTCGCTTCATGAAAAGATCTGAGATCCAC 679656 Query 79405 AGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCG 79464 || || ||| ||||| ||| || | ||| || | ||| |||||| || || ||| Sbjct 679657 AGTGCGTAGAACAGGTCTCGGGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGAAGGTCG 679716 Query 79465 AGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGC 79524 || ||||| | || ||||| ||||| ||||| || || ||||| || | |||| ||| Sbjct 679717 AGGAAGTCAAAGACATCGGCATGCCAAGGCTCGAGGTAAATGGCAAATGCACCCGGTCGC 679776 Query 79525 TTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACG 79584 ||| ||| || || | |||||| || || ||| | ||| |||||||||||||||| Sbjct 679777 TTGTTGCCACCTTGATCGACGTAACGAGCGGTGGCATCGAAGGCTCGGAGCATGGGCACA 679836 Query 79585 ATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAG 79644 || |||| || | ||| || || ||| || | || | ||||| ||||| | Sbjct 679837 ATACCGTTGGAGTAGCCATTTGTACCGGCAATGTAAGAGCCCTTTGCCCGGATGTTGTGG 679896 Query 79645 CAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCG 79704 ||||| ||||| || || | ||||||||| | || || |||||| |||||| Sbjct 679897 ATGTGGAGACCGATACCACCTGCGGTCTTGGAGATCTTGGCACAAGTCTTGAGGGTCTCG 679956 Query 79705 TAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGG 79764 ||||| || ||||||||||| |||| ||| ||||| ||||||||| |||||| || ||| Sbjct 679957 TAGATACCGTCGATCGAGTCATCCTGCATTGCGACGAGGAAGCAGGACGACATTTGAGGG 680016 Query 79765 TTGTTCGTACCGGCGTTGAAGAG 79787 | ||||||||||||||||| Sbjct 680017 TGAGGTGTACCGGCGTTGAAGAG 680039 Score = 217 bits (240), Expect = 2e-51 Identities = 472/700 (67%), Gaps = 20/700 (3%) Strand=Plus/Minus Query 19217 CTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAG 19276 || |||||||||||||| |||| || |||||| ||| ||||| || || ||| || Sbjct 680039 CTCTTCAACGCCGGTACACCTCACCCTCAAATGTCGTCCTGCTTCCTCGTCGCAATGCAG 679980 Query 19277 GATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGG 19336 |||||| || || || ||||||||||| |||||| || || | ||||||||| Sbjct 679979 GATGACTCGATCGACGGTATCTACGAGACCCTCAAGACTTGTGCCAAGATCTCCAAGACC 679920 Query 19337 TCCGGGGGTATCGGGATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGG 19396 | || |||||||| ||||| | || |||||| | | || | || || Sbjct 679919 GCAGGTGGTATCGGTCTCCACATCCACAACATCCGGGCAAAGGGCTCTTACATTGCCGGT 679860 Query 19397 ACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGG 19456 || || || || ||||||| || || |||||||| | |||| | ||| || | Sbjct 679859 ACAAATGGCTACTCCAACGGTATTGTGCCCATGCTCCGAGCCTTCGATGCCACCGCTCGT 679800 Query 19457 TACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGG 19516 |||||| | || || ||| ||| || ||| | || ||||| ||||||||||| ||| Sbjct 679799 TACGTCGATCAAGGTGGCAACAAGCGACCGGGTGCATTTGCCATTTACCTCGAGCCTTGG 679740 Query 19517 CACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGC 19576 || || || ||| | || |||||||| || ||| |||||| || | || ||| | ||| Sbjct 679739 CATGCCGATGTCTTTGACTTCCTCGACCTTCGCAAGAACCACGGCAAGGAAGAGGTCCGC 679680 Query 19577 TGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAG 19636 || ||||| ||| || ||||||| | || || |||||| || || || Sbjct 679679 GCCCGAGACCTGTTCTACGCACTGTGGATCTCAGATCTTTTCATGAAGCGAGTCGAATCT 679620 Query 19637 GACGAAGAATGGCACCTGATGTGCCC-GCACGAATGCCCTGGCCTACCCGACGTCTACGG 19695 |||| || ||| | |||||||| ||| || ||||| || || ||||| | |||| Sbjct 679619 GACGGTGATTGGACTTTAATGTGCCCTGCA-GAGTGCCCCGGTCTTTCCGACTGCCACGG 679561 Query 19696 CGAGGCGTTCAATGAG---TTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAG----- 19747 ||| | ||| |||| ||||| || |||| || | ||| || |||| Sbjct 679560 CGAAGAGTT---TGAGCGCCTGTACGAGAGCTACG-AG---AAGGCTGG--CAAGGGTCG 679510 Query 19748 -AAGGTGGTCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGG 19806 ||| || ||| | | | | ||| | | ||||| | |||| ||||||||| Sbjct 679509 CAAGACCATCAAGGCACAGAAGCTTTGGTTCGCCATCCTCGAGGCCCAGACCGAGACCGG 679450 Query 19807 CACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGG 19866 | || | |||| ||||| |||||||| |||||||| || || || || || |||| Sbjct 679449 TAACCCCTTCATGCTTTACAAAGACGCCGCCAACGCCAAATCCAACCAACAGCACCTCGG 679390 Query 19867 CGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAG 19906 |||||||||| |||||||| || ||||| ||||| ||| Sbjct 679389 GACGATCAAGTCATCCAACCTATGCACTGAGATCATTGAG 679350 Score = 123 bits (136), Expect = 3e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 78199 TAGTA-CATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTCGACAGCTT 78257 ||||| ||| || |||||||||||| ||||||||||||| | |||||| | || | Sbjct 678349 TAGTAGCAT-CCAGTCTTGAGACCCCTCTTCCATCCGTAGAAGTGCATCGAGGTGAGTTG 678407 Query 78258 GGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATGTACGCACC 78317 || | ||||| | | | ||||||||||||||| ||||||||||| | || || Sbjct 678408 GGAAAAGGATGGGTTGGCAAGGTGGATGTTGAGCGACTGAGACTGGTCGATAAAGGCGCC 678467 Query 78318 GCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTCCGGTAAAT 78377 ||||| || || | |||||||| | |||||| | ||||||||||| |||| ||| || Sbjct 678468 TCGGTCTGCGGCGAGATCGATGACAGCCTTTTGTGAAATCTCCCAGACGGTCTTGTAGAT 678527 Query 78378 GGCCTTCAGCTC 78389 ||||| ||||| Sbjct 678528 CGCCTTGAGCTC 678539 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 20618 CTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCG 20677 ||||||| || |||| |||||| ||||| || |||| ||| ||||||| | || Sbjct 678536 CTCAAGGCGATCTACAAGACCGTCTGGGAGATTTCACAAAAGGCTGTCATCGATCTCGCC 678477 Query 20678 GCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCG 20737 || || || ||||||| ||||||||||| ||||||||||| || | | | || || Sbjct 678476 GCAGACCGAGGCGCCTTTATCGACCAGTCTCAGTCGCTCAACATCCACCTTGCCAACCCA 678417 Query 20738 AGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGC 20797 | | | | || | ||| ||||| | ||||| ||| | | ||| |||||||| || Sbjct 678416 TCCTTTTCCCAACTCACCTCGATGCACTTCTACGGATGGAAGAGGGGTCTCAAGACTGG- 678358 Query 20798 ATG-TACTATCTGCGGACC 20815 ||| ||||| || || ||| Sbjct 678357 ATGCTACTACCTCCGCACC 678339 >seq84 Length=171189 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 |||||||| || || || || || ||||||||||| || || || || || ||||| Sbjct 164205 GCTTTTGCGTGTGTCGAGGGCATTTTCTTCTCTGGGTCATTTGCAGCCATATTTTGGCTG 164264 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 ||||| || || | ||||| || ||| ||| || ||||| |||||||| || |||||| Sbjct 164265 AAAAAACGAGGATTGATGCCTGGATTGACTTTTTCAAACGAACTGATTTCGCGAGACGAG 164324 Query 60111 GG 60112 || Sbjct 164325 GG 164326 >seq24 Length=290538 Score = 82.4 bits (90), Expect = 8e-11 Identities = 109/149 (73%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 59971 CATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGT 60030 ||||||| | || | || || ||||| || || || |||||||| || || || | Sbjct 19011 CATTTGCTGAGCGATTGATCGCCTTTGCCGCTGTAGAGGGTATCTTCTTTTCAGGATCAT 19070 Query 60031 TCTGTG-CTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAAC 60089 | || | | || ||||||||||| || || || |||||||| || || | ||||| ||| Sbjct 19071 T-TGCGTCCATCTTCTGGCTCAAGAAACGAGGACTCATGCCCGGTCTTACATTCTCAAAC 19129 Query 60090 GAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 ||||| || || || |||||||| || || Sbjct 19130 GAGCTCATCTCGCGAGACGAGGGTCTTCA 19158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548523764659440