Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1 232 7e-56 seq130 116 4e-21 seq84 86.0 7e-12 >seq1 Length=1646047 Score = 232 bits (256), Expect = 7e-56 Identities = 332/465 (71%), Gaps = 2/465 (0%) Strand=Plus/Minus Query 53294 CTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAG 53353 || |||||||| ||||| ||||||||| |||||| ||||||||| || || ||| || Sbjct 680039 CTCTTCAACGCCGGTACACCTCACCCTCAAATGTCGTCCTGCTTCCTCGTCGCAATGCAG 679980 Query 53354 GATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGG 53413 ||||||||||||||||| ||||||||||| |||||| |||||| | ||||||||| Sbjct 679979 GATGACTCGATCGACGGTATCTACGAGACCCTCAAGACTTGTGCCAAGATCTCCAAGACC 679920 Query 53414 TCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGG 53473 | |||||||||||| ||||| | ||| |||| || || ||| | || || Sbjct 679919 GCAGGTGGTATCGGTCTCCACATCCACAACATCCGGGCAAAGGGCTCTTACATTGCCGGT 679860 Query 53474 ACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGG 53533 || || ||| | || | || || ||||| |||||||| | |||| | ||| || || Sbjct 679859 ACAAATGGCTACTCCAACGGTATTGTGCCCATGCTCCGAGCCTTCGATGCCACCGCTCGT 679800 Query 53534 TACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGG 53593 |||||| | || ||||| ||||| ||| | || ||||| ||||||||||| ||| Sbjct 679799 TACGTCGATCAAGGTGGCAACAAGCGACCGGGTGCATTTGCCATTTACCTCGAGCCTTGG 679740 Query 53594 CACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGC 53653 || ||||| | | || || ||||| || || ||| || || | |||||| | ||| Sbjct 679739 CATGCCGATGTCTTTGACTTCCTCGACCTTCGCAAGAACCACGGCAAGGAAGAGGTCCGC 679680 Query 53654 TGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAA 53712 ||| |||||||| ||| || |||||||| | || || |||||| | || || Sbjct 679679 GCCCGAGACCTGTTCTAC-GCACTGTGGATCTCAGATCTTTTCATGAAGCGAGTCGAATC 679621 Query 53713 GGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT 53757 |||| || ||| | |||||||| ||||||||||| || Sbjct 679620 TGACGGTGATTGGACTTTAATGTGCCCTGCAGAGTGCCCCGGTCT 679576 Score = 100 bits (110), Expect = 3e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 55727 CTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGT 55786 ||||||| ||| ||| ||| || ||||||||| |||| ||| | | || || | Sbjct 678536 CTCAAGGCGATCTACAAGACCGTCTGGGAGATTTCACAAAAGGCTGTCATCGATCTCGCC 678477 Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 || || || || || | ||||||||||| ||||| || |||||| | | | || || Sbjct 678476 GCAGACCGAGGCGCCTTTATCGACCAGTCTCAGTCGCTCAACATCCACCTTGCCAACCCA 678417 Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906 || | || | | | |||||||||||| ||||| ||||||| ||| |||||||| || Sbjct 678416 TCCTTTTCCCAACTCACCTCGATGCACTTCTACGGATGGAAGAGGGGTCTCAAGACTGG- 678358 Query 55907 ATG-TACTATCTGCGGACC 55924 ||| ||||| || || ||| Sbjct 678357 ATGCTACTACCTCCGCACC 678339 >seq130 Length=370431 Score = 116 bits (128), Expect = 4e-21 Identities = 180/257 (70%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 117344 GCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACA 117403 |||| ||| ||||||||||| || |||| |||| || || | ||||||| |||||| Sbjct 97751 GCAATACGTGTACCGAATTGACCGTTCGGATCCAGAAGATTGACGTTGTTGCTTCCCACA 97810 Query 117404 AAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCC 117463 || || |||||| ||| || || | | || ||||| ||||| || || ||| Sbjct 97811 AATGACTGCGCCAAGCCGACGATGGTCATGTTCAAACTAGCCTCCCCATGATGGTATGCC 97870 Query 117464 GTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTC 117523 |||| || | ||| || || | || ||| |||||||| || || || || ||| | Sbjct 97871 GTCTTTTCTGACACATATCCAGTCAACTGCGCCACCTTGATCTCCTTTGTGAGATTCCGC 97930 Query 117524 TTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGG 117583 |||| ||| || | | ||| || || |||| ||||||||||| || ||||| |||| Sbjct 97931 TTGAAGCAACCAAACAACACTTTTCGTTGACCGGGCTTCAGACCGTCAGCCACCGAAGGG 97990 Query 117584 ATCGAACGCTTGATGTC 117600 || || || || |||| Sbjct 97991 ATAGACCGGATGTTGTC 98007 >seq84 Length=171189 Score = 86.0 bits (94), Expect = 7e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 |||| ||| || ||||| | | |||||||| | ||| || || |||| |||||| ||| Sbjct 164311 ATCAGTTCGTTTGAAAAAGTCAATCCAGGCATCAATCCTCGTTTTTTCAGCCAAAATATG 164252 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGT 74900 || || || ||| |||||| ||||| |||||||||||||| ||||| | |||| Sbjct 164251 GCTGCAAATGACCCAGAGAAGAAAATGCCCTCGACACACGCAAAAGCGACCAAGCGT 164195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214967129800