Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq24 161 1e-34 seq1 158 1e-33 seq77 147 2e-30 seq84 96.9 4e-15 seq22 95.1 1e-14 >seq24 Length=290538 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| ||||||||||||||||| || |||||||| || || Sbjct 53010 ATGCAAATCTTCGTAAAGACCCTTACCGGCAAGACTATCACGCTTGAGGTCGAATCGTCC 53069 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || | || || || || |||||||||||||| || || || || ||| Sbjct 53070 GATACCATTGACAACGTCAAAGCGAAGATCCAGGACAAGGAGGGTATCCCACCTGATCAG 53129 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || || || | || || || | ||||| ||| Sbjct 53130 CAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAAGACGGCCGAACGCTCTCCGACTACAAT 53189 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| ||||| || || ||| | || | || ||||| Sbjct 53190 ATCCAGAAGGAATCGACTCTCCACCTTGTCCTTCGATTGCGAGGTGG 53236 Score = 138 bits (152), Expect = 1e-27 Identities = 136/176 (77%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||| || |||||||||||||| || || |||||||||||||| Sbjct 52735 ATGCAGATCTTCGTCAAAACCCTTACCGGCAAGACCATCACCCTTGAGGTTGAGTCGTCC 52794 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || |||||||||||||| |||||||| || || Sbjct 52795 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAA 52854 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 ||||| | || || || || |||||||| ||||| | || ||||| | ||||| Sbjct 52855 CAGCGATTGATCTTCGCCGGCAAGCAACTTGAGGACGGCCGAACCCTTTCCGACTA 52910 Score = 113 bits (124), Expect = 5e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 ||||| ||||||||||| || || |||||||| || || | ||||| || | ||| Sbjct 52481 CTTACTGGCAAGACTATCACCCTCGAGGTTGAATCTTCGGACACCATTGACAACGTCAAG 52540 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || |||||||||||||| |||||||| ||||| ||||| | || || || || Sbjct 52541 GCCAAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAACAGCGATTGATCTTCGCCGGC 52600 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 || || || ||||||| || ||||| ||||||| Sbjct 52601 AAACAGCTTGAGGATGGCCGAACCCTCTCAGACTA 52635 Score = 102 bits (112), Expect = 9e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785 || |||||| ||| || || || |||||||| || ||||| || || |||||||| Sbjct 19031 GCCTTTGCCGCTGTAGAGGGTATCTTCTTTTCAGGATCATTTGCGTCCATCTTCTGGCTC 19090 Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAG 64845 || || || || || ||||| ||||| | || || |||||||| ||||| || |||||| Sbjct 19091 AAGAAACGAGGACTCATGCCCGGTCTTACATTCTCAAACGAGCTCATCTCGCGAGACGAG 19150 Query 64846 GGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCT 64886 || || ||| || ||||| | | ||||||||||||| Sbjct 19151 GGTCTTCACACCGACTTTGCTTGTCTCTTGTTCAGCCACCT 19191 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 27505 GAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGAT 27564 ||||| || || || ||||| |||||||| ||||| || || |||||| | ||||||| Sbjct 53386 GAGGGTATCCCACCCGACCAACAGCGTCTGATTTTCGCCGGAAAGCAATTAGAGGATGGC 53445 Query 27565 CGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTT 27624 || ||||| | ||||| || | || || || ||||| | || || ||||||||||| Sbjct 53446 CGAACCCTGTCTGACTACAACATTCAGAAAGAGTCCACCTTGCACCTCGTCTTGCGTCTC 53505 Query 27625 CGCGGTGG 27632 || ||||| Sbjct 53506 CGTGGTGG 53513 >seq1 Length=1646047 Score = 158 bits (174), Expect = 1e-33 Identities = 450/687 (66%), Gaps = 11/687 (2%) Strand=Plus/Plus Query 80887 ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTA 80946 || || || ||||| || || |||| ||||| || || ||||| || | | | Sbjct 679288 ACGAAGGCAGGAAGAGCAAGCGAGGCCAAGTTGCAGACTGCGACCTCATCTGGTGCAGAG 679347 Query 80947 AACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTT 81006 |||| | ||| || ||||| | || || ||||| || || || |||| | ||||| Sbjct 679348 TACTCAATGATCTCAGTGCATAGGTTGGATGACTTGATCGTCCCGAGGTGCTGTTGGTTG 679407 Query 81007 GACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGAC 81066 || ||||||||| ||||| ||||| |||| | ||| ||||||||||| ||| | | Sbjct 679408 GATTTGGCGTTGGCGGCGTCTTTGTAAAGCATGAAGGGGTTACCGGTCTCGGTCTGGGCC 679467 Query 81067 TTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCC 81126 | |||||||||| ||||| || | ||||||| |||||| ||||| | | Sbjct 679468 TCGAGGATGGCGAACCAAAGCTTCTGTGCCTTGATGGTCTTGCGACCCTTGCCAGCCTTC 679527 Query 81127 ACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCA 81185 | || | |||| || | || |||| | ||||| || | || | ||||| Sbjct 679528 TCGTAGCTCTCGTACAGGCGC-TCAAACTCTTCGCCGTGGCAGTCGGAAAGACCGGGGCA 679586 Query 81186 CTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTC 81245 ||| ||||||||| | ||| || ||| || || |||||||||| || Sbjct 679587 CTCTGCAGGGCACATTAAAGTCCAATCACCGTCAGATTCGACTCGCTTCATGAAAAGATC 679646 Query 81246 AGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAG 81305 | |||||| || ||| ||||||||| ||| ||| |||| || | || ||||| Sbjct 679647 TGAGATCCACAGTGCGTAGAACAGGTCTCGGGCGCGGACCTCTTCCTTGCCGTGGTTCTT 679706 Query 81306 GCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGC-GATCG 81364 ||| | ||||| ||||| | || || |||||||| ||||| || || | ||| || Sbjct 679707 GCGAAGGTCGAGGAAGTCAAAGACATCGGCATGCCAAGGCTCGAGGTAAATGGCAAATGC 679766 Query 81365 ACCC-----CTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACG 81419 |||| |||| |||||| || | ||||||||| || || || | || | || Sbjct 679767 ACCCGGTCGCTTG---TTGCCACCTTGATCGACGTAACGAGCGGTGGCATCGAAGGCTCG 679823 Query 81420 CAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGC 81479 | ||| || | ||||| | || | || || ||||| | || || ||||| || Sbjct 679824 GAGCATGGGCACAATACCGTTGGAGTAGCCATTTGTACCGGCAATGTAAGAGCCCTTTGC 679883 Query 81480 GCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCG 81539 || | ||| ||| |||||||| ||||||| ||| || |||| ||||| Sbjct 679884 CCGGATGTTGTGGATGTGGAGACCGATACCACCTGCGGTCTTGGAGATCTTGGCACAAGT 679943 Query 81540 GTTCATGGTCTCATAAATTCCCTCGAT 81566 || | |||||| || || || ||||| Sbjct 679944 CTTGAGGGTCTCGTAGATACCGTCGAT 679970 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 80038 GTCCGCAGATAGTA-CATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGA 80096 || || || ||||| ||| || |||||||| ||| ||||||| ||||| | |||||| || Sbjct 678340 GTGCGGAGGTAGTAGCAT-CCAGTCTTGAGACCCCTCTTCCATCCGTAGAAGTGCATCGA 678398 Query 80097 ACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGAT 80156 |||| | | || | ||||| | | | |||||| || ||||||||||| ||| Sbjct 678399 GGTGAGTTGGGAAAAGGATGGGTTGGCAAGGTGGATGTTGAGCGACTGAGACTGGTCGAT 678458 Query 80157 GAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 || || || || ||||| || | || || | | |||||||| ||| ||||| || || Sbjct 678459 AAAGGCGCCTCGGTCTGCGGCGAGATCGATGACAGCCTTTTGTGAAATCTCCCAGACGGT 678518 >seq77 Length=196091 Score = 147 bits (162), Expect = 2e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 ||||| || ||||| || || |||||||| ||||| || | || | ||| | ||| Sbjct 17894 CTTACGGGTAAGACGATCACCCTTGAGGTCGAGTCCTCGGACACGATCGACAATGTCAAG 17835 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 | || || |||||||||||||| || || || ||||| ||||| || || || || || Sbjct 17834 TCCAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAACAGCGACTCATCTTCGCCGGC 17775 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||| |||||||||| ||||||| | | ||||| ||| |||| ||||| |||||||| Sbjct 17774 AAGCAGCTCGAGGATGGTCGTACCTTGTCCGACTACAATATCCAGAAGGAGTCCACTCTC 17715 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || |||||| | || || ||||| Sbjct 17714 CACCTCGTCTTGAGGCTGCGAGGTGG 17689 >seq84 Length=171189 Score = 96.9 bits (106), Expect = 4e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785 |||||||| ||||| || || |||||||| ||||||||||| | || || ||||| Sbjct 164205 GCTTTTGCGTGTGTCGAGGGCATTTTCTTCTCTGGGTCATTTGCAGCCATATTTTGGCTG 164264 Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAG 64845 ||||| || || ||||||| || || | ||||| ||||| ||||| || || |||||| Sbjct 164265 AAAAAACGAGGATTGATGCCTGGATTGACTTTTTCAAACGAACTGATTTCGCGAGACGAG 164324 Query 64846 GGG 64848 ||| Sbjct 164325 GGG 164327 >seq22 Length=38496 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 ||||| |||||||| || || || ||||| ||||| || | || | ||| | ||| Sbjct 34863 CTTACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACGATCGACAATGTCAAG 34804 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 | || ||||||||||||||||| || || || ||||| ||||| | || ||||| || Sbjct 34803 TCGAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCAACAGCGATTGATCTTTGCCGGA 34744 Query 27547 AAGCAACTCGAGGATGATCGTACCC-TAGCAGACTA 27581 |||||||| || |||| | |||| |||| ||||| Sbjct 34743 AAGCAACTTGAAGATGGAAGGACCCTTAGC-GACTA 34709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309323539120