Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq24 152 1e-31 seq77 149 1e-30 seq22 122 2e-22 >seq24 Length=290538 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| ||||| || || || ||||| || || || | || || | || ||| Sbjct 53221 AGGACAAGGTGGAGAGTCGATTCCTTCTGGATATTGTAGTCGGAGAGCGTTCGGCCGTCT 53162 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || || || || ||||| || | || ||||||||| Sbjct 53161 TCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCC 53102 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||| ||||| || ||||| || || ||| ||||| || ||||| ||| Sbjct 53101 TGGATCTTCGCTTTGACGTTGTCAATGGTATCGGACGATTCGACCTCAAGCGTGATAGTC 53042 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || |||||||| || | ||||| Sbjct 53041 TTGCCGGTAAGGGTCTTTACGAAGATTTGCAT 53010 Score = 123 bits (136), Expect = 6e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 210948 AGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGA 211007 ||||| | ||||| || ||||| ||||| |||||||| | || |||||||| |||||| Sbjct 52626 AGGGTTCGGCCATCCTCAAGCTGTTTGCCGGCGAAGATCAATCGCTGTTGGTCGGGAGGA 52567 Query 211008 ACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACC 211067 | || ||||||||||||||||| || ||||| || |||||||| || ||||||| Sbjct 52566 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAAGATTCAACC 52507 Query 211068 TCGAGAGTGATCGTCTTTCCCGTGAG 211093 ||||| ||||| ||||| || || || Sbjct 52506 TCGAGGGTGATAGTCTTGCCAGTAAG 52481 Score = 120 bits (132), Expect = 7e-22 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998 || || | |||||| | || || || || |||||||| |||||||| | || ||||| Sbjct 52910 TAGTCGGAAAGGGTTCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGA 52851 Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 || ||||||| || ||||||||||||||||| || ||||| || |||||||| || Sbjct 52850 TCGGGAGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAC 52791 Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| || ||||| ||||| || || || || || || || | |||||| Sbjct 52790 GACTCAACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAGATCTGCAT 52735 Score = 89.7 bits (98), Expect = 1e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||||||||||||||| |||||||| || |||||||| || || ||||||||||| Sbjct 53336 CTTGTCCTGGATCTTCGCCTTCACGTTGTCAATGGTGTCCGATGACTCGACCTCGAGAGT 53277 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| || || || ||||| ||||| | |||||| Sbjct 53276 GATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCAT 53238 Score = 89.7 bits (98), Expect = 1e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| |||||||| |||||||| || |||||||| || || || || | || ||||| Sbjct 53776 GACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCTTC 53717 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || || || || |||||||| || || |||||||||||||||| |||||| Sbjct 53716 GAGTTGTTTTCCCGCGAAGATGAGTCGCTGTTGGTCAGGAGGAATACCTTCC 53665 >seq77 Length=196091 Score = 149 bits (164), Expect = 1e-30 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || || | ||| ||||| ||||||||||| || ||||| || || || | | ||| Sbjct 17695 CGCAGCCTCAAGACGAGGTGGAGAGTGGACTCCTTCTGGATATTGTAGTCGGACAAGGTA 17754 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||| || ||||||||||| |||||||| || || |||||||| || || | || Sbjct 17755 CGACCATCCTCGAGCTGCTTGCCGGCGAAGATGAGTCGCTGTTGGTCGGGTGGGATACCC 17814 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| || || || ||||| ||||| ||| || ||||| || Sbjct 17815 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCAAGG 17874 Query 211074 GTGATCGTCTTTCCCGTGAG 211093 ||||||||||| ||||| || Sbjct 17875 GTGATCGTCTTACCCGTAAG 17894 >seq22 Length=38496 Score = 122 bits (134), Expect = 2e-22 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 210947 AAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 |||||||||||||||||| || ||||| || || ||||| | || ||||||||||| || Sbjct 34717 AAGGGTCCTTCCATCTTCAAGTTGCTTTCCGGCAAAGATCAATCGCTGTTGGTCAGGGGG 34776 Query 211007 AACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAAC 211066 | || ||||||||||| ||||| || || || ||||| ||||| ||| || || Sbjct 34777 GATACCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATCGTGTCCGAGGACTCGAC 34836 Query 211067 CTCGAGAGTGATCGTCTTTCCCGTGAG 211093 |||||| ||||| ||||| ||||| || Sbjct 34837 CTCGAGGGTGATGGTCTTGCCCGTAAG 34863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159149757403115