Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq24 109 5e-19 >seq24 Length=290538 Score = 109 bits (120), Expect = 5e-19 Identities = 143/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || ||||| || |||| || ||||| |||| |||||||| ||||| || || Sbjct 53200 TCCTTCTGGATATTGTAGTCGGAGAGCGTTCGGCCGTCTTCAAGCTGCTTGCCGGCGAAG 53141 Query 39154 ATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || ||||||||||| || |||||| | | ||| |||||| ||| ||| ||||| ||| Sbjct 53140 ATGAGACGCTGCTGATCAGGTGGG-ATACCCTCCTTGTCCTGGATCTTCGCTTTGA-CGT 53083 Query 39213 CGCCACCG-TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | || | ||||| ||| || || || | ||||||| | || || || || || || | Sbjct 53082 TGTCAATGGTATCGGACGATTCGACCTCAAGCGTGATAGTCTTGCCGGTAAGGGTCTTTA 53023 Query 39272 CAAAGATTTGCAT 39284 | ||||||||||| Sbjct 53022 CGAAGATTTGCAT 53010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429544809501863