Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq77 170 5e-37 seq24 149 1e-30 seq22 104 6e-17 >seq77 Length=196091 Score = 170 bits (188), Expect = 5e-37 Identities = 156/197 (79%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || |||| ||| |||||||||||||| || || |||| |||||| |||| ||| || Sbjct 17695 CGCAGCCTCAAGACGAGGTGGAGAGTGGACTCCTTCTGGATATTGTAGTCGGACAAGGTA 17754 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || |||||||| || |||||||| ||||| ||||||||||| || ||||| Sbjct 17755 CGACCATCCTCGAGCTGCTTGCCGGCGAAGATGAGTCGCTGTTGGTCGGGTGGGATACCC 17814 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| ||| ||| ||||| ||||| |||| || || || | Sbjct 17815 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCAAGG 17874 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||||||||| ||||| Sbjct 17875 GTGATCGTCTTACCCGT 17891 >seq24 Length=290538 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||||||||| ||||| || |||| |||||| |||| | |||| || ||| Sbjct 53221 AGGACAAGGTGGAGAGTCGATTCCTTCTGGATATTGTAGTCGGAGAGCGTTCGGCCGTCT 53162 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || || || || || ||||| |||||||| Sbjct 53161 TCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCC 53102 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| || || || ||||| || || | ||| || || | |||||| ||| Sbjct 53101 TGGATCTTCGCTTTGACGTTGTCAATGGTATCGGACGATTCGACCTCAAGCGTGATAGTC 53042 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || |||| ||| | |||||| Sbjct 53041 TTGCCGGTAAGGGTCTTTACGAAGATTTGCAT 53010 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 225550 GTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATA 225609 |||| ||||| || ||||| || || |||||||| | ||| ||||||||||| |||||| Sbjct 52623 GTTCGGCCATCCTCAAGCTGTTTGCCGGCGAAGATCAATCGCTGTTGGTCGGGAGGAATA 52564 Query 225610 CCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCT 225669 || |||||||| |||||||| ||| || || |||||||| || | ||| || || Sbjct 52563 CCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAAGATTCAACCTCG 52504 Query 225670 AACGTGATCGTCTTGCCCGT 225689 | ||||| |||||||| || Sbjct 52503 AGGGTGATAGTCTTGCCAGT 52484 Score = 91.5 bits (100), Expect = 4e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 || ||| ||||| || ||||| || || |||| ||||| ||| || ||| | || || Sbjct 53779 CAAGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTC 53720 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||| || || || || |||||||| ||||| |||||||| || |||||||||||| Sbjct 53719 TTCGAGTTGTTTTCCCGCGAAGATGAGTCGCTGTTGGTCAGGAGGAATACCTTCC 53665 >seq22 Length=38496 Score = 104 bits (114), Expect = 6e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225550 GTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATA 225609 || || |||||||| || ||||| || || ||||| | ||| |||||||| || || ||| Sbjct 34721 GTCCTTCCATCTTCAAGTTGCTTTCCGGCAAAGATCAATCGCTGTTGGTCAGGGGGGATA 34780 Query 225610 CCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCT 225669 || |||||||| || ||||| ||| ||| ||||| ||||| |||| || || || Sbjct 34781 CCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCG 34840 Query 225670 AACGTGATCGTCTTGCCCGT 225689 | ||||| ||||||||||| Sbjct 34841 AGGGTGATGGTCTTGCCCGT 34860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192528892824794