Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq24 109 8e-19 seq1 87.8 2e-12 seq84 84.2 3e-11 >seq24 Length=290538 Score = 109 bits (120), Expect = 8e-19 Identities = 174/247 (70%), Gaps = 7/247 (3%) Strand=Plus/Minus Query 48132 AACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAA 48191 |||| | ||| ||||| || |||||||| || |||| || | ||||| || Sbjct 19182 AACAAGAGACAAGCAAAGTCGGTGTGAAGACCCTCGTCTCGCGAGATGAGCTCGTTTGAG 19123 Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251 ||||| ||||||||||| ||||| ||||| |||||||| || || | ||| || ||||| Sbjct 19122 AATGTAAGACCGGGCATGAGTCCTCGTTTCTTGAGCCAGAAGATGGACGCAAATGATCCT 19063 Query 48252 GAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCG 48311 |||||||| || || ||||| || ||||| ||| | | || ||| | | ||| ||| Sbjct 19062 GAAAAGAAGATACCCTCTACAGCGGCAAAGGCGATCAATCGCTCAGCAAATGTGG-ATCG 19004 Query 48312 TTGTGT-----ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTT 48366 ||| || |||||| ||||||| | |||||||| | | ||| || || || | Sbjct 19003 TTG-GTCAGAGATCCACTTGAGTGCCCAGTTGGCCTTCTTTTGGATACATGGGATAGTGT 18945 Query 48367 CTATAGC 48373 | || || Sbjct 18944 CGATGGC 18938 >seq1 Length=1646047 Score = 87.8 bits (96), Expect = 2e-12 Identities = 275/426 (65%), Gaps = 0/426 (0%) Strand=Plus/Plus Query 77970 GGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATC 78029 |||||||| || | ||| ||||| || | ||||| ||||| || ||||| | ||| Sbjct 679594 GGGCACATTAAAGTCCAATCACCGTCAGATTCGACTCGCTTCATGAAAAGATCTGAGATC 679653 Query 78030 CATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGA 78089 || || || || || ||||||| | ||||| || || ||||| ||| Sbjct 679654 CACAGTGCGTAGAACAGGTCTCGGGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGAAGG 679713 Query 78090 TCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGT 78149 ||||| || || | | ||| | |||||| || || || || || || | | || ||| Sbjct 679714 TCGAGGAAGTCAAAGACATCGGCATGCCAAGGCTCGAGGTAAATGGCAAATGCACCCGGT 679773 Query 78150 CGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGA 78209 || || || || || ||||| | || | |||||| || | ||| | ||| || Sbjct 679774 CGCTTGTTGCCACCTTGATCGACGTAACGAGCGGTGGCATCGAAGGCTCGGAGCATGGGC 679833 Query 78210 ATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTA 78269 | ||||||||| || |||||||| || | ||| ||| || |||| || || || Sbjct 679834 ACAATACCGTTGGAGTAGCCATTTGTACCGGCAATGTAAGAGCCCTTTGCCCGGATGTTG 679893 Query 78270 CTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTA 78329 ||| | || || || ||||| |||| || || || ||| || | || Sbjct 679894 TGGATGTGGAGACCGATACCACCTGCGGTCTTGGAGATCTTGGCACAAGTCTTGAGGGTC 679953 Query 78330 TCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGA 78389 ||||||||||| || || ||||||| ||| | || || ||| ||||||||| Sbjct 679954 TCGTAGATACCGTCGATCGAGTCATCCTGCATTGCGACGAGGAAGCAGGACGACATTTGA 680013 Query 78390 TGATGA 78395 | ||| Sbjct 680014 GGGTGA 680019 >seq84 Length=171189 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 48176 AATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATAT 48235 ||| | |||||| ||||| || | || ||||| | ||| |||||||| ||||||||||| Sbjct 164312 AATCAGTTCGTTTGAAAAAGTCAATCCAGGCATCAATCCTCGTTTTTTCAGCCAAAATAT 164253 Query 48236 TGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 || || || || ||||| ||||| ||||| || || |||||| ||| Sbjct 164252 GGCTGCAAATGACCCAGAGAAGAAAATGCCCTCGACACACGCAAAAGCG 164204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694667488812640