Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq24 107 4e-18 seq77 86.0 1e-11 >seq24 Length=290538 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || ||||| || || || ||||| ||||| |||| | |||| || ||| Sbjct 53221 AGGACAAGGTGGAGAGTCGATTCCTTCTGGATATTGTAGTCGGAGAGCGTTCGGCCGTCT 53162 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | |||||| || | | ||| || ||||| || Sbjct 53161 TCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCC 53102 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || |||||| | || | | | || || || || ||||| || ||||| Sbjct 53101 TGGATCTTCGCTTTGACGTTGTCAATGGTATCGGACGATTCGACCTCAAGCGTGATAGTC 53042 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||| ||||||| ||||| Sbjct 53041 TTGCCGGTAAGGGTCTTTACGAAGATTTGCAT 53010 >seq77 Length=196091 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 || || | ||| || || ||||| ||||| || ||||| ||||| |||| || || | Sbjct 17698 AGCCTCAAGACGAGGTGGAGAGTGGACTCCTTCTGGATATTGTAGTCGGACAAGGTACGA 17757 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| || || || ||||||||||| || | ||| ||||| | | ||| || ||| Sbjct 17758 CCATCCTCGAGCTGCTTGCCGGCGAAGATGAGTCGCTGTTGGTCGGGTGGGATACCCTCC 17817 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || |||||| | || | |||| || ||| || ||||| || Sbjct 17818 TTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCAAGGGTG 17877 Query 152067 ATAGTTTTGCCCGTGAG 152083 || || || ||||| || Sbjct 17878 ATCGTCTTACCCGTAAG 17894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153818567717321