Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq24 150 4e-31 seq77 132 1e-25 seq22 125 1e-23 >seq24 Length=290538 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| |||| ||||| || || || | || ||| || ||||| |||||||| | Sbjct 53237 ACCACCTCGCAATCGAAGGACAAGGTGGAGAGTCGATTCCTTCTGGATATTGTAGTCGGA 53178 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||| ||||| || || || || || ||||| ||||| | ||| || || ||| || Sbjct 53177 GAGCGTTCGGCCGTCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCAGGTGG 53118 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| ||||| ||| | || || || || || | |||||| Sbjct 53117 GATACCCTCCTTGTCCTGGATCTTCGCTTTGACGTTGTCAATGGTATCGGACGATTCGAC 53058 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 53057 CTCAAGCGTGATAGTCTTGCCGGTAAGGGTCTTTACGAAGATTTGCAT 53010 Score = 143 bits (158), Expect = 6e-29 Identities = 124/154 (81%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 ||||||| | || || ||||||||||| || ||||| ||||| |||||||| || |||| Sbjct 52637 TGTAGTCTGAGAGGGTTCGGCCATCCTCAAGCTGTTTGCCGGCGAAGATCAATCGCTGTT 52578 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 |||| ||||||||||||||||| |||||||| || || ||| | || || ||||||| Sbjct 52577 GGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCG 52518 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 ||| ||| || ||||| ||||| ||||| || || Sbjct 52517 AAGATTCAACCTCGAGGGTGATAGTCTTGCCAGT 52484 Score = 136 bits (150), Expect = 8e-27 Identities = 137/178 (77%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 ||||||| | ||| || ||||| ||||| ||||| || ||||| |||||||| || |||| Sbjct 52912 TGTAGTCGGAAAGGGTTCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAATCGCTGTT 52853 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 | || ||||||||||||||||| |||||||| || || ||| | || || ||||| | Sbjct 52852 GATCGGGAGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGG 52793 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | | || || || || ||||| ||||| || || | || || ||||| |||||||| Sbjct 52792 ACGACTCAACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAGATCTGCAT 52735 Score = 98.7 bits (108), Expect = 2e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | || || || || ||| ||||| || ||||||||||||| Sbjct 53514 ACCACCACGGAGACGCAAGACGAGGTGCAAGGTGGACTCTTTCTGAATGTTGTAGTCAGA 53455 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||||| ||| || ||||| || |||| ||| |||||||| || Sbjct 53454 CAGGGTTCGGCCATCCTCTAATTGCTTTCCGGCGAAAATCAGACGCTGTTGGTCGGGTGG 53395 Query 282992 AATACCCTC 283000 |||||||| Sbjct 53394 GATACCCTC 53386 Score = 93.3 bits (102), Expect = 9e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 283001 CTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGT 283060 |||||| || ||||| || || ||| | || |||||||| |||| ||||||||||| || Sbjct 53613 CTTGTCCTGAATCTTCGCCTTGACGTTGTCAATAGTGTCTGAAGACTCGACTTCGAGGGT 53554 Query 283061 GATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||| || || | |||||| ||||| || ||||| Sbjct 53553 GATCGTCTTTCCGGTAAGAGTCTTCACGAAGATTTGCAT 53515 Score = 86.0 bits (94), Expect = 1e-11 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||| || | ||||| || | ||| || || |||||||||||||| Sbjct 53794 ACCACCACGCAAACGCAAGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 53735 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| || || |||||||| || || ||||| | || ||||||||| || Sbjct 53734 CAGAGTGCGGCCGTCTTCGAGTTGTTTTCCCGCGAAGATGAGTCGCTGTTGGTCAGGAGG 53675 Query 282992 AATACCCTCC 283001 |||||| ||| Sbjct 53674 AATACCTTCC 53665 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 283001 CTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGT 283060 |||||| |||||||| || || ||| | || || |||||||| | ||||| |||||||| Sbjct 53336 CTTGTCCTGGATCTTCGCCTTCACGTTGTCAATGGTGTCCGATGACTCGACCTCGAGAGT 53277 Query 283061 GATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| ||||| || || | ||||| || || |||||||| Sbjct 53276 GATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCAT 53238 >seq77 Length=196091 Score = 132 bits (146), Expect = 1e-25 Identities = 154/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 |||||| ||||| | | || || || | ||| || || ||||| |||||||| | Sbjct 17688 ACCACCTCGCAGCCTCAAGACGAGGTGGAGAGTGGACTCCTTCTGGATATTGTAGTCGGA 17747 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| || || |||||||| || || || ||||| ||||| | || |||||||| | Sbjct 17748 CAAG-GTACGACCATCCTCGAGCTGCTTGCCGGCGAAGATGAGTCGCTGTTGGTCGGGTG 17806 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 | |||||||||||||| |||||||| | || || | ||||| |||||||| | |||| Sbjct 17807 GGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGA 17866 Query 283051 CTTCGAGAGTGATCGTCTTACCCGT 283075 | || || ||||||||||||||||| Sbjct 17867 CCTCAAGGGTGATCGTCTTACCCGT 17891 >seq22 Length=38496 Score = 125 bits (138), Expect = 1e-23 Identities = 120/154 (78%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 ||||||| ||| || | ||||| || ||||| || |||||||||||||| || |||| Sbjct 34707 TGTAGTCGCTAAGGGTCCTTCCATCTTCAAGTTGCTTTCCGGCAAAGATCAATCGCTGTT 34766 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 ||||| || |||||||||||||| || ||||| | || || | ||||| ||||||| Sbjct 34767 GGTCAGGGGGGATACCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATCGTGTCCG 34826 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 | | ||||| ||||| ||||| ||||| ||||| Sbjct 34827 AGGACTCGACCTCGAGGGTGATGGTCTTGCCCGT 34860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046737174886754