Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq24 138 3e-27 seq77 134 3e-26 seq22 127 5e-24 >seq24 Length=290538 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || || || ||||| || ||||| ||| || || Sbjct 53013 CAAATCTTCGTAAAGACCCTTACCGGCAAGACTATCACGCTTGAGGTCGAATCGTCCGAT 53072 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||||||| ||||| |||||||| || || ||||| || || ||||| Sbjct 53073 ACCATTGACAACGTCAAAGCGAAGATCCAGGACAAGGAGGGTATCCCACCTGATCAGCAG 53132 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| ||||| || | || || |||| || || || Sbjct 53133 CGTCTCATCTTCGCCGGCAAGCAGCTTGAAGACGGCCGAACGCTCTCCGACTACAATATC 53192 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || || ||||| Sbjct 53193 CAGAAGGAATCGACTCTCCACCTTGT 53218 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || || || || || |||||||||||||| ||| || |||||||| || |||||||| Sbjct 52481 CTTACTGGCAAGACTATCACCCTCGAGGTTGAATCTTCGGACACCATTGACAACGTCAAG 52540 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| |||||||| || || || ||||| ||||| || ||| | ||||||||||| Sbjct 52541 GCCAAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAACAGCGATTGATCTTCGCCGGC 52600 Query 178062 AAACAGCTCGAAGATGG 178078 |||||||| || ||||| Sbjct 52601 AAACAGCTTGAGGATGG 52617 Score = 109 bits (120), Expect = 1e-18 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| || || || || || |||||||| ||||| || || ||| Sbjct 52738 CAGATCTTCGTCAAAACCCTTACCGGCAAGACCATCACCCTTGAGGTTGAGTCGTCCGAC 52797 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| |||||||| || || || ||||| || || || Sbjct 52798 ACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAACAG 52857 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 ||| | ||||||||||| || || || || || || | || ||| |||| || Sbjct 52858 CGATTGATCTTCGCCGGCAAGCAACTTGAGGACGGCCGAACCCTTTCCGACTA 52910 Score = 91.5 bits (100), Expect = 4e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| ||||| || ||||| |||||||||||||| || || |||||| Sbjct 53518 CAAATCTTCGTGAAGACTCTTACCGGAAAGACGATCACCCTCGAAGTCGAGTCTTCAGAC 53577 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAA 178018 || || || |||||||| |||||||||||||| Sbjct 53578 ACTATTGACAACGTCAAGGCGAAGATTCAGGACAA 53612 >seq77 Length=196091 Score = 134 bits (148), Expect = 3e-26 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || || || || ||||||||||| ||||| || ||| ||||| ||||| || ||||| Sbjct 17894 CTTACGGGTAAGACGATCACCCTTGAGGTCGAGTCCTCGGACACGATCGACAATGTCAAG 17835 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| |||||||| || || ||||| || ||||| || ||||| ||||||||||| Sbjct 17834 TCCAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAACAGCGACTCATCTTCGCCGGC 17775 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACT 178120 || |||||||| ||||| | || |||| |||| || || |||| || || || || || Sbjct 17774 AAGCAGCTCGAGGATGGTCGTAC-CTTGTCCGACTACAATATCCAGAAGGAGTCCACTCT 17716 Query 178121 GCATCTTGTTTTGAGACT 178138 || || || ||||| || Sbjct 17715 CCACCTCGTCTTGAGGCT 17698 >seq22 Length=38496 Score = 127 bits (140), Expect = 5e-24 Identities = 121/155 (78%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || || || || || |||||||||||||| || ||| ||||| ||||| || ||||| Sbjct 34863 CTTACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACGATCGACAATGTCAAG 34804 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 |||||||||||||| || || ||||| || ||||| || ||| | ||||| |||||| Sbjct 34803 TCGAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCAACAGCGATTGATCTTTGCCGGA 34744 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 || || || |||||||||||||| ||| ||| || Sbjct 34743 AAGCAACTTGAAGATGGAAGGACCCTTAGCGACTA 34709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203728871156294