Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq24 114 1e-20 seq77 104 2e-17 >seq24 Length=290538 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 |||||||| || || ||||||||||| || || |||| || ||||||||||||||||| Sbjct 53200 TCCTTCTGGATATTGTAGTCGGAGAGCGTTCGGCCGTCTTCAAGCTGCTTGCCGGCGAAG 53141 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 || || ||||| || || | || | | |||||||||| || | || |||| ||| Sbjct 53140 ATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCC-TGGATCTTCGCTTTGACGTT 53082 Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | | || ||| ||| || ||||| | ||| || || || || || || |||||||| Sbjct 53081 GTCAATGGTATCGGACGATTCGACCTCAAGCGTGATAGTCTTGCCGGTAAGGGTCTTTAC 53022 Query 41851 GAAAATCTGCAT 41862 ||| || ||||| Sbjct 53021 GAAGATTTGCAT 53010 Score = 100 bits (110), Expect = 3e-16 Identities = 130/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 41687 TAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGG 41746 |||||||| ||||| || |||| || || |||||||||||||| |||| |||||||| Sbjct 52910 TAGTCGGAAAGGGTTCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGA 52851 Query 41747 TCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCT 41805 || | |||| | |||||||||| || | || || | ||| | | | |||||| Sbjct 52850 TCGGGAGGAATACCCTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGA 52792 Query 41806 CGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| ||||| | || || || || || || || || || ||||| |||||||| Sbjct 52791 CGACTCAACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAGATCTGCAT 52735 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || || || |||| ||| ||| ||||||||||| ||||| || Sbjct 53513 CCACCACGGAGACGCAAGACGAGGTGCAAGGTGGACTCTTTCTGAATGTTGTAGTCAGAC 53454 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGG 41754 ||||| || | || || | ||||| |||||||| ||||| ||||||||||| | ||| Sbjct 53453 AGGGTTCGGCCATCCTCTAATTGCTTTCCGGCGAAAATCAGACGCTGTTGGTCGGGTGGG 53394 Query 41755 A-ACGCTCTC 41763 | || ||||| Sbjct 53393 ATACCCTCTC 53384 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || | ||| || ||||| || || ||| ||||||||| ||||| |||||| Sbjct 53793 CCACCACGCAAACGCAAGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 53734 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| ||||| || || || ||||| || || ||||||||||| | ||| Sbjct 53733 AGAGTGCGGCCGTCTTCGAGTTGTTTTCCCGCGAAGATGAGTCGCTGTTGGTCAGGAGGA 53674 Query 41756 A 41756 | Sbjct 53673 A 53673 >seq77 Length=196091 Score = 104 bits (114), Expect = 2e-17 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 || || || || || ||| ||||||||| || || |||||||| | ||| || | || Sbjct 17704 AAGACGAGGTGGAGAGTGGACTCCTTCTGGATATTGTAGTCGGACAAGGTACGACCATCC 17763 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 |||||||||||||||||||| || || ||||||||||| | || | | |||||||||| Sbjct 17764 TCGAGCTGCTTGCCGGCGAAGATGAGTCGCTGTTGGTCGGGTGGGATACCCTCCTTGTCC 17823 Query 41771 ATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCG 41828 ||| || ||| || | || | ||||| ||||| ||||| | || |||| Sbjct 17824 TGGATCTTGGACTTGACATTGTCG--ATCGTGTCCGAGGACTCGACCTCAAGGGTGATCG 17881 Query 41829 TTTTACCCGTCAG 41841 | |||||||| || Sbjct 17882 TCTTACCCGTAAG 17894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303127401200