Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq24 105 8e-18 >seq24 Length=437227 Score = 105 bits (116), Expect = 8e-18 Identities = 207/305 (68%), Gaps = 6/305 (2%) Strand=Plus/Minus Query 145963 GGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAA 146022 ||||| ||||||||| | |||| | | ||||| || |||||||| ||| ||| Sbjct 155383 GGGTTGTTCTTGATCTTGTCAATCACTTGCGCCAGCTGATCGACGCCCTGTCCCGTATAA 155324 Query 146023 TCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGC 146082 || || | | | |||| |||| ||||| ||||||||||| || || ||||| || Sbjct 155323 TCATCCTCGCACGTCTTGTACTCGGCGCCGAAATGCCTCCACTGAAATCCATAGACCGGT 155264 Query 146083 CCCAGGTCCCCGGGCTCCCT---GTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGAC 146139 |||| ||| || ||||| ||| ||||| ||| || | ||||| | |||| || Sbjct 155263 CCCAAGTCACC---TTCCCTTCGGTGTCCCAGTCCGACCTTGTCGAGGTACTCCCTTGAT 155207 Query 146140 CCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCC 146199 ||||| || ||||||| | | || | | | ||| || ||| || || || Sbjct 155206 CCGTTTCCGGCCCAGATATGAATATCCTTTTCCGCGAGAAGCTTTCCGTCGGTTGAGCCG 155147 Query 146200 CTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGC 146259 | || ||||||||| |||||||||| ||| || | |||||| | ||| || || || Sbjct 155146 CGGACGAACCAGAGTAGCTCTTCGACGACGCCGCGAAGGAAGACTCGCTTCGTAGTTAGG 155087 Query 146260 AGGGG 146264 || || Sbjct 155086 AGCGG 155082 Score = 84.2 bits (92), Expect = 3e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 145671 CAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTG 145730 |||||| | ||| || ||||||||||||| | || || || || || |||| | | Sbjct 155764 CAGCTGAACCTTGAGTGGCTCCACGTGGTCCCGATACACATGAGCATCACCCATCTGGAG 155705 Query 145731 GATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTA 145790 ||| || || ||||| |||| | ||||| ||||| ||||| |||||||| Sbjct 155704 GATAAATTCGTGCGGCTCCGTATCCGTCATCAAGGCGATCATGTGTGTCAGGAGGGAGTA 155645 Query 145791 GCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCA 145850 | || |||||||| || || || || || | ||| | ||||| ||||||| |||| Sbjct 155644 GGACGCGATGTTGAATGGGACGCCGAGGCCGAGGTCGCATGAGCGTTGGTACATGAGGCA 155585 Query 145851 GGAGAG 145856 |||||| Sbjct 155584 GGAGAG 155579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590074314301480