Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq159 120 3e-22 seq107 113 5e-20 seq190 96.9 4e-15 seq288 95.1 1e-14 >seq159 Length=269225 Score = 120 bits (132), Expect = 3e-22 Identities = 138/183 (75%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 |||||||| || ||||||||| |||| ||||| || | |||| | | | |||| |||| Sbjct 15458 CTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATCGACAACG-TCAA 15516 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 | || || | ||||| || |||||||| | |||||||| ||| | |||| ||| || Sbjct 15517 GTCCAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGATTGATCTTCGCCGG 15576 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 ||| ||||| || || | || ||||| ||||||||||||||||||||| |||| | Sbjct 15577 CAAGCAGCTCGAAGATGGCCGAACCCTTTCGGACTACAACATCCAGAAGGAGTCCACCTT 15636 Query 40890 GCA 40892 ||| Sbjct 15637 GCA 15639 >seq107 Length=1016152 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || || |||||| |||| || ||| || | Sbjct 88910 ATGCAGATTTTCGTCAAGACTCTTACCGGAAAGACAATCACCCTCGAAGTTGAATCCTCG 88969 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | || || || | || || ||||| ||||| | |||||| Sbjct 88970 GACACCATCGACAATGTGAAATCCAAGATCCAGGATAAGGAGGGTATCCCGCCTGACCAG 89029 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 |||||| | |||| ||| || || ||||| || || | || ||||| |||||||||| Sbjct 89030 CAACGATTGATCTTCGCTGGAAAGCAGCTCGAAGATGGACGAACCCTTTCCGACTACAAC 89089 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| |||| |||| | || |||| ||| |||| || Sbjct 89090 ATCCAGAAGGAATCCACCTTGCACTTGGTCCTGCGATTGCGGGGTGG 89136 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 ||| | | || || || || || |||||||| |||| |||||| | |||||| | Sbjct 88464 TCGAACAGACTCTTACCGGAAAGACCATCACTCTCGAGGTCGAATCTTCCGACACTATCG 88523 Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819 | | ||||| || || | ||||| ||||| || || | || ||||||||| | | Sbjct 88524 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCTCCTGATCAGCAACGATTGA 88583 Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 ||| ||| || || ||||| || || | || || ||| || |||||||||||||||| Sbjct 88584 TCTTCGCTGGAAAGCAGCTCGAAGATGGTCGAACACTCTCGGATTACAACATCCAGAAGG 88643 Query 40880 AGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 | ||||||| || || || ||||| || |||| || Sbjct 88644 AATCCACGCTTCACCTCGTCTTGCGGCTGCGGGGTGG 88680 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || || |||||| | || ||||| | | Sbjct 88682 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACAATCACCTTGGAAGTCGAGTCGAGT 88741 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | ||||| || |||| ||||| ||||| || || | |||||| Sbjct 88742 GATACAATCGACAATGTCAAGAGCAAGATTCAGGACAAGGAGGGGATTCCTCCTGACCAG 88801 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | |||| || ||||| |||||||| |||| || || ||| |||||||||| Sbjct 88802 CAGCGATTGATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGAACTCTCTCCGACTACAAC 88861 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || || |||||| | || ||||| || || Sbjct 88862 ATTCAAAAGGAGTCGACTCTGCACCTGGT 88890 >seq190 Length=239985 Score = 96.9 bits (106), Expect = 4e-15 Identities = 222/331 (67%), Gaps = 10/331 (3%) Strand=Plus/Minus Query 117093 CCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCA 117152 |||| || ||||||||||| || || |||||||| || ||||| ||| |||||| |||| Sbjct 13044 CCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCGGGACTGACGTTCTCCAACGAACTCA 12985 Query 117153 TCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGC 117212 ||||| | |||||||| || || ||||||||| || | || |||| || || | Sbjct 12984 TCTCCCGAGACGAGGGACTCCACACCGACTTTGCATGCCTCCTCTTCACCCACCTGAAAC 12925 Query 117213 AGCGACCGAGCGCGGCGCGCGTCAGGGA--GATCGTCACCGACGCGGTCGCCATCGAGCA 117270 |||||| | ||| ||| || | ||| || || || |||| | |||| Sbjct 12924 GACGACCGCACCCGGAAACCGT--GGAACGCATCATCCGTGAAGCCGTCGACCTCGAATG 12867 Query 117271 GCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACG---AT 117327 ||||| || || || |||||||| || | || | || ||||| | || Sbjct 12866 TGAATTCCTGACGGACGCCCTGCCGGTCTCATTGATCGGCATGAA---CGAAAAGCTCAT 12810 Query 117328 GTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCA 117387 || || ||||| |||||||||||| | ||||| ||| || | || |||| Sbjct 12809 GTGCCAGTACATTCGGTTCGTCGCCGATCGTCTGCTCGTCGCCCTTGGAAACGACAAGGT 12750 Query 117388 CTACAACACGCCCAACCCGCTGGACTTTATG 117418 |||||| |||||||| | ||||||||| Sbjct 12749 GTACAACGATACCAACCCGTTCGACTTTATG 12719 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 116779 CGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGA 116838 |||||| ||||||||||| || || |||||||| ||| | || || || ||||| Sbjct 13469 CGACGGTATCGTCAACGAAAACCTCGTCGAGCGATTCTCGTCCGAAGTTCAATGCGCCGA 13410 Query 116839 GGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTC 116898 || || ||||||||| || || ||| ||||||||| | |||||||||| || || Sbjct 13409 AGCCAAGTTCTTCTACGGTTTCCAAATCATGATGGAGAACATTCACTCGGAAACCTACTC 13350 Query 116899 GACCCTCATCGACACGTAC 116917 | | | |||||||| ||| Sbjct 13349 GCTCTTGATCGACACCTAC 13331 >seq288 Length=125410 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 40777 ATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAG 40836 |||| ||||| || || |||||| | |||||||| ||| | |||| ||| ||||| ||| Sbjct 9723 ATTCAAGACAAGGAAGGTATCCCCCCTGACCAGCAGCGATTGATCTTCGCCGGCAAGCAG 9782 Query 40837 CTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTA 40896 || || || | || ||| | |||||||||||||||||||||| | || |||| | Sbjct 9783 CTCGAAGATGGCCGAACCTTGTCCGACTACAACATCCAGAAGGAGTCGACTTTGCACTTG 9842 Query 40897 GTGTTGCGCTTGAGGGGCGG 40916 || ||||| ||| | || || Sbjct 9843 GTCTTGCGATTGCGAGGTGG 9862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217029639120