Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq107 134 1e-26 seq190 114 1e-20 seq159 95.1 1e-14 >seq107 Length=1016152 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || |||| ||| |||||||| | |||||||| || |||||||||||||| Sbjct 89366 TACCACCTCGCAATCGCAAAACCAAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCG 89307 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || ||||| | ||| ||||| ||| |||| | || ||||||||||| | Sbjct 89306 ACAAGGTTCGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCGTTGCTGATCGGGCG 89247 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||| |||||||| ||| || || || | |||| ||||||| | ||||| Sbjct 89246 GGATGCCTTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCCGAGGACTCGA 89187 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | ||| | ||| || ||||||| || || ||||| || ||||| Sbjct 89186 CTTCAAGGGTGATCGTCTTTCCGGTCAACGTCTTCACAAAGATTTGCAT 89138 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || |||| || |||||||| | || || || || || |||||||| ||| Sbjct 89138 TACCACCCCGCAATCGCAGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCGG 89079 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || ||| |||||||| ||||||||| |||| | || ||||| || || | Sbjct 89078 AAAGGGTTCGTCCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCAGGCG 89019 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || |||||||| || || || ||| || | |||| |||||||| | || | Sbjct 89018 GGATACCCTCCTTATCCTGGATCTTGGATTTCACATTGTCGATGGTGTCCGAGGATTCAA 88959 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | |||| ||| | || || ||||| ||||| || || ||||||||||| Sbjct 88958 CTTCGAGGGTGATTGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 88910 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | || | |||| ||| | || ||||| |||||||||||||| ||| Sbjct 88910 TACCTCCTCGCAGCCTGAGGACCAGGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCGG 88851 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || || || ||||| || ||||| |||| | |||||||| || |||| Sbjct 88850 AGAGAGTTCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGAG 88791 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||||||||| ||| || || || | |||| || || | ||||| Sbjct 88790 GAATCCCCTCCTTGTCCTGAATCTTGCTCTTGACATTGTCGATTGTATCACTCGACTCGA 88731 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | ||| | || || ||||||| || || || || |||||||| Sbjct 88730 CTTCCAAGGTGATTGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 88682 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | ||| || | ||| | || || || || || ||||||||||| Sbjct 88682 TACCACCCCGCAGCCGCAAGACGAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCG 88623 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || ||| |||||||| ||||||||| |||| | || |||||||| |||| Sbjct 88622 AGAGTGTTCGACCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCAGGAG 88563 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||||||||| || || || || | |||| ||||| | |||| Sbjct 88562 GAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGAAGATTCGA 88503 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 |||||| || | || || ||||| ||||| Sbjct 88502 CCTCGAGAGTGATGGTCTTTCCGGTAAGAGT 88472 >seq190 Length=239985 Score = 114 bits (126), Expect = 1e-20 Identities = 243/353 (69%), Gaps = 15/353 (4%) Strand=Plus/Minus Query 44942 ATGCCCGGACTGACGTTTAGCAACGAATTGATTTCGAGAGACGAAGGTCTGCACACCAAC 45001 ||||| ||||||||||| ||||||| | || || ||||||| || || |||||| || Sbjct 13015 ATGCCGGGACTGACGTTCTCCAACGAACTCATCTCCCGAGACGAGGGACTCCACACCGAC 12956 Query 45002 TTTGCCTGCCTCTACTATAAT-ACGAGAGTCGATCAAAAGTTGGACGCGCCCACCGTC-A 45059 ||||| |||||| || | || || ||| | | || || ||||| | Sbjct 12955 TTTGCATGCCTCCTCTTCACCCACCTGAAACGACGACC----GCACCCGGAAACCGTGGA 12900 Query 45060 ACGACATGTTCTCCGAAGCCGTGGCCATCGAGATG-GAATTTTTTGCTGAGGCTCTGCCC 45118 ||| ||| || |||||||| | | |||| ||| ||||| | | || || ||||| Sbjct 12899 ACG-CATCATCCGTGAAGCCGTCGACCTCGA-ATGTGAATTCCTGACGGACGCCCTGCCG 12842 Query 45119 GAATCGTTGGTGGGAATGAACGCGAATATGATGAGAAAGTACATTGAGTTTGTCGCCGAT 45178 | || ||| | || ||||||| || | ||| | |||||||| ||| ||||||||| Sbjct 12841 GTCTCATTGATCGGCATGAACGAAAAGCTCATGTGCCAGTACATTCGGTTCGTCGCCGAT 12782 Query 45179 CGTCTTCTCGTC-CAGTT--AAAGTATCCCAAGATGTACTATACTGAGAACCCATTCGAG 45235 ||||| |||||| | || ||| | |||| ||||| | | ||||| ||||| Sbjct 12781 CGTCTGCTCGTCGCCCTTGGAAACGA---CAAGGTGTACAACGATACCAACCCGTTCGAC 12725 Query 45236 TTTATGAACAATATTTCGTTGGAGGGCAAAACTAAtttttttGAGAAACGCGT 45288 |||||| | || |||||| | |||| ||| | || ||||| ||| |||||| Sbjct 12724 TTTATGGAAAACATTTCGCTCCAGGGTAAAGCCAACTTTTTCGAGTCACGCGT 12672 >seq159 Length=269225 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||| |||||||| | || ||||| || || |||||||| || Sbjct 15664 ACCACCTCGGAGCCTCAAGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCCGA 15605 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | || || ||| |||||||| || || ||| |||| | |||||||| || || || Sbjct 15604 AAGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGCGG 15545 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 ||||| |||||||| || || || || | |||| |||||||| | |||||| Sbjct 15544 GATGCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGAC 15485 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAG 118717 ||||| ||| | || || || || || Sbjct 15484 CTCGAGGGTGATGGTCTTACCCGTGAG 15458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433828618177204