Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq107 138 9e-28 seq288 100 2e-16 seq159 86.0 5e-12 >seq107 Length=1016152 Score = 138 bits (152), Expect = 9e-28 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||| ||||| || ||||||||||| || |||||||||||||||||| || | Sbjct 89364 CCACCTCGCAATCGCAAAACCAAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGAC 89305 Query 45170 A--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 | ||| ||| |||| |||| || ||||||||||| |||||||| || || ||||| | Sbjct 89304 AAGGTT--CGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCGTTGCTGATCGGGCG 89247 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | || ||||||||| ||| || ||| || | | ||||| ||| | Sbjct 89246 GGATGCCTTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCCGAGGACTCGA 89187 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | || | ||| |||||||| || |||| |||||||||||||||||||| Sbjct 89186 CTTCAAGGGTGATCGTCTTTCCGGTCAACGTCTTCACAAAGATTTGCAT 89138 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || |||| || || | |||| |||||| || |||||| ||||||||||||||| Sbjct 88908 CCTCCTCGCAGCCTGAGGACCAGGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCGGAG 88849 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || |||| ||||| || || || || || ||||| ||||| ||||| ||||| Sbjct 88848 AGAGTTCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGAGGA 88789 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| ||| || ||| || | | | || | ||| || Sbjct 88788 ATCCCCTCCTTGTCCTGAATCTTGCTCTTGACATTGTCGATTGTATCACTCGACTCGACT 88729 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || ||||| || |||| ||||| || ||||| ||||| Sbjct 88728 TCCAAGGTGATTGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 88682 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | ||||| | |||||||||| ||| |||||||| |||||||||||| Sbjct 89136 CCACCCCGCAATCGCAGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCGGAA 89077 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || | || || || || ||||| ||||| ||||| || || ||||| || || Sbjct 89076 AGGGTTCGTCCATCTTCGAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCAGGCGGG 89017 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||| ||| || || || || | | | ||||| || || Sbjct 89016 ATACCCTCCTTATCCTGGATCTTGGATTTCACATTGTCGATGGTGTCCGAGGATTCAACT 88957 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || ||||| || || |||||||| || || || ||||| Sbjct 88956 TCGAGGGTGATTGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 88910 >seq288 Length=125410 Score = 100 bits (110), Expect = 2e-16 Identities = 106/137 (77%), Gaps = 6/137 (4%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||| ||||| || |||||||||| || ||||||||| |||||||||||| | Sbjct 9862 CCACCTCGCAATCGCAAGACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 9803 Query 45170 A--GTT-GGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGA 45226 | ||| ||| ||| ||| || || || |||||||| ||||| ||||| ||||| || Sbjct 9802 AAGGTTCGGCCATCTTCG---AGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGG 9746 Query 45227 GGCACACCCTCCTTGTC 45243 || | ||| |||||||| Sbjct 9745 GGGATACCTTCCTTGTC 9729 >seq159 Length=269225 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/209 (69%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||| | || || |||||||||| ||| ||||||||| ||||||||||| Sbjct 15663 CCACCTCGGAGCCTCAAGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 15604 Query 45170 AG---TTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGA 45226 || | ||| ||| ||| || || || |||||||| ||||| ||||| ||||| || Sbjct 15603 AGGGTTCGGCCATCTTCG---AGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGC 15547 Query 45227 GGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCC 45286 || | || ||||||||| || || ||| || | | | ||||| ||| Sbjct 15546 GGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCG 15487 Query 45287 ACCTCCACGGTAATCGTCTTGCCCGTCAG 45315 ||||| | ||| || ||||| ||||| || Sbjct 15486 ACCTCGAGGGTGATGGTCTTACCCGTGAG 15458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395073577352077