Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq107 89.7 4e-13 >seq107 Length=1016152 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || || || || || ||||||||||| || | || ||| || || ||| Sbjct 89346 ACCAAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGACAAGGTTCGACCGTCCTCC 89287 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 || || || || || |||| | | ||| ||||| || | ||||||||| || | Sbjct 89286 AACTGCTTTCCGGCGAAGATCAACCGTTGCTGATCGGGCGGGATGCCTTCCTTGTCCTGA 89227 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | |||||| | | | |||||| || |||| ||||| |||||| | || Sbjct 89226 ATCTTGGACTTGACGTTGTCGATAGTGTCCGAGGACTCGACTTCAAGGGTGATCGTCTTT 89167 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||| || || ||||| |||||||| Sbjct 89166 CCGGTCAACGTCTTCACAAAGATTTGCAT 89138 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || || || |||| ||| || || || || ||||||||||||||||||| Sbjct 88908 CCTCCTCGCAGCCTGAGGACCAGGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCGGAG 88849 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | ||||||| || ||||| ||| |||| | || || || || || Sbjct 88848 AGAGTTCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGAGGA 88789 Query 18219 ACGCCTTCCTTATCGGCAAT-TTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || ||||| || ||| ||| | |||||| | | | || |||| | |||| Sbjct 88788 ATCCCCTCCTTGTCCTGAATCTTGCT-CTTGACATTGTCGATTGTATCACTCGACTCGAC 88730 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | |||||| | || |||||||| || || || || || ||||| Sbjct 88729 TTCCAAGGTGATTGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 88682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379342441963065