Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq129 158 1e-33 seq107 102 7e-17 >seq129 Length=301134 Score = 158 bits (174), Expect = 1e-33 Identities = 273/397 (69%), Gaps = 0/397 (0%) Strand=Plus/Minus Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536 || || || || |||| ||| || || ||||| |||||||| || || || | ||| Sbjct 26228 GCGAAAGCACCGGGTCGCTTGTTACCTCCCTGGTCGACGTATCGAGCAGTCGCATCGTAA 26169 Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCT 23596 ||| ||||| || |||| ||| || || ||| || || | ||| || Sbjct 26168 GCTCGAAGCATGGGGACGATACCATTCGAGTACCCGTTGGTTCCGGCAATGTACGATCCC 26109 Query 23597 TTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCG 23656 || ||||| | |||||||| || || || || || || | | ||| || ||||| || Sbjct 26108 TTGGCTCGGATGTTGTGAATGTTCAATCCAATACCGCCCGCAGTTTTGGAGATCATGGCA 26049 Query 23657 CATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAA 23716 || || || ||||||||||| ||||| || ||| || || | ||||||||||| Sbjct 26048 CAAGTCTTGAGGGTGTCGTAGATTCCCTCAATCGAGTCGTCCTTCATTGCGACCAAGAAG 25989 Query 23717 CACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTA 23776 |||||||||| || | | |||||| |||| ||||| ||||| |||||| ||| Sbjct 25988 CACGAAGACAACTGAGGGTGAGGCGTACCGGCGTTGAACAAGGTCGGCGAGGCGTGGGTA 25929 Query 23777 AAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGT 23836 ||||||| | ||||| || || || || || || | || | ||| ||||| Sbjct 25928 AAGTATCGCTCGGACATGAGGTTATATGTCTCAATAACCTTTTCGACGTCTCGGCCGTGG 25869 Query 23837 ATACCGATGGCGACGCGCATCATCATGTATTGAGGTC 23873 ||||||| |||||| ||||| ||||||| ||||||| Sbjct 25868 ATACCGACGGCGACTCGCATGATCATGTGCTGAGGTC 25832 Score = 111 bits (122), Expect = 1e-19 Identities = 492/766 (64%), Gaps = 21/766 (3%) Strand=Plus/Minus Query 22134 CGGCCGGTTTGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAA 22193 |||||||| ||| || | || |||||||| ||||| || || ||||||| |||| | Sbjct 27727 CGGCCGGTCGGGTTCGCAAGTAGTACATGCCGGTCTTGAGTCCTTTCTTCCAACCGTAGA 27668 Query 22194 AATGTATCGACGTCAATTTTCC-ATAACTCGGCAAGTCCATGTACACATTGAACGACTGA 22252 | || |||||||| | | || || || ||| |||| | ||||| || || Sbjct 27667 AGTGCATCGACGTGAGCTGACCCATCGAAGGGTTGGTC-ATGTGGATATTGAGGGATTGC 27609 Query 22253 CTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATC-GAC-- 22309 ||||||||||| |||||||| ||||| || | || || | ||| | || | | Sbjct 27608 GATTGATCGATAAAGGCTCCTCGGTCGGCAGCGAGATCGATGA---TACCCTTCTGGCTG 27552 Query 22310 ATTTCCCATACGGTCTTGTACAGTTGCCTG-ATCTCTAACGGTATCGATTCGA-TCCTCT 22367 |||||||| || |||||||| | | |||| | |||| || || | | || | | | Sbjct 27551 ATTTCCCAAACAGTCTTGTAGA-TAGCCTTCAACTCTGCAGGAAT-GTTGGGAATGTTTT 27494 Query 22368 GGACGGACCCGTTATTGTGT---ATGATCAAATTTTTAATCGTATCGTTCCACAAACCGA 22424 ||| ||| || | |||| ||||| || || ||| |||| ||| | ||| | Sbjct 27493 GGATGGAGCC---ACCGTGTGCGATGATTCGGTTCTTCATCTCGTCGTCCCAGAGACCCA 27437 Query 22425 TGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGC 22484 | | ||| || | || || || || || || || |||| | || | Sbjct 27436 GGTTGACCAAGTCACGCAACAACCAGGGGCAGACGACCTGGAAATCACCGGCGAGCACAC 27377 Query 22485 GGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAG 22544 | || |||||||||| ||| ||||||||||| |||| || ||||| || || | Sbjct 27376 GTCGGGAGTAAATGTTGCTGGTGTACGGTTCGAAACATTCGTTCCAGCCCAGAATTTGTG 27317 Query 22545 CGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAA 22604 ||| || || |||||||| || || | ||| |||||||| | | ||| ||| | | Sbjct 27316 AGGTGGATGCAGTCGGCATGGGAGCGACCAGGAGCGAGTTGCGTAGGCCAGTCTTGGCGA 27257 Query 22605 TTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATAT 22664 | || ||| | | | ||| ||||| || ||||| || | || |||| | | Sbjct 27256 TCTTGGCCTTCAAGGTTGCCCAATCCCAGAGGGGCGACGGGGT---AATGCCCCAAAGGT 27200 Query 22665 CGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATA 22724 |||| |||||| ||| |||| |||||| ||||||||| || | ||| || || | | Sbjct 27199 CGTACTGCAACTTGCCTTGACTGGCCGGGGAGCCTTCGTAGGTCTGGTAAGGGCCCTCCA 27140 Query 22725 TCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCT 22784 | || | || | || ||| | |||| ||| || || || || ||||||| | Sbjct 27139 CTTCTGCCATCTCAGAAGACGACTCGAGCGCGGCGTGGTAGATGGTTTCAAAGATTTGCA 27080 Query 22785 TGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCG 22844 ||| | || ||| || | ||| | ||||| |||| || || | || | Sbjct 27079 CGTTGAGTTGTCGGGCTTCGGGACCGTCGAAAGGCATGCGCAATGCCATAAAGGTATCGG 27020 Query 22845 CCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGA 22890 | | ||| ||||| || | ||||| || |||| | || ||||| Sbjct 27019 CGAGACCTTGAACACCGAGACCGACAGGACGGTGTCGCATGTTCGA 26974 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 23342 TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGC 23401 || || |||| ||| || | || || ||||| || ||||||||||| || ||||| || Sbjct 26417 TCGACACGTCGCATGAACATGTCGGGGATCCAGAGCGCGTAGAACAGGTCTCGGGCTCGG 26358 Query 23402 ACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCAC 23461 || || || |||||| ||||||| | ||| | ||||| || || ||||| ||||| Sbjct 26357 ACTTCTTCCTTGCCGTGGTTCTTTCGAAGATCGATGAAGTCGAAGACATCCGCGTGCCAG 26298 Query 23462 GGCTCGAGGTA 23472 || |||||||| Sbjct 26297 GGTTCGAGGTA 26287 >seq107 Length=1016152 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| || || || |||||| | || || || || Sbjct 88682 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACAATCACCTTGGAAGTCGAGTCGAGT 88741 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | ||||| | || ||||||||| || | || || |||||| Sbjct 88742 GATACAATCGACAATGTCAAGAGCAAGATTCAGGACAAGGAGGGGATTCCTCCTGACCAG 88801 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || || |||||||| ||| |||||||| ||| | ||| || ||| Sbjct 88802 CAGCGATTGATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGAACTCTCTCCGACTACAAC 88861 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| || |||||||| || ||||| || || ||| | || |||| Sbjct 88862 ATTCAAAAGGAGTCGACTCTGCACCTGGTCCTCAGGCTGCGAGGAGGTA 88910 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| |||| || || ||||||||| | || || || | || Sbjct 89138 ATGCAAATCTTTGTGAAGACGTTGACCGGAAAGACGATCACCCTTGAAGTCGAGTCCTCG 89197 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | ||||| | || ||||||||||||| | |||||||| ||| Sbjct 89198 GACACTATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAAGGCATCCCGCCCGATCAG 89257 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || | || ||||| || || |||||||| ||| | || || ||||| ||| Sbjct 89258 CAACGGTTGATCTTCGCCGGAAAGCAGTTGGAGGACGGTCGAACCTTGTCGGATTACAAC 89317 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| || || || || || || |||| Sbjct 89318 ATTCAGAAGGAGTCTACCCTGCACTTGGT 89346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764522209040