Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq107 134 1e-26 >seq107 Length=1016152 Score = 134 bits (148), Expect = 1e-26 Identities = 171/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| || |||||||| ||||| | |||||||| || |||||||| ||||| | Sbjct 89364 CCACCTCGCAATCGCAAAACCAAGTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGAC 89305 Query 139598 ATTGTGCTCGA--GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | || |||| ||| || | ||| || || || |||||| |||||||||||||| | Sbjct 89304 AAGGT--TCGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCGTTGCTGATCGGGCG 89247 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 | |||||||| ||||| ||| | || | || | | || | ||||| | || ||| Sbjct 89246 GGATGCCTTCCTTGTC-CTGAATCTTGGACTTGACGTTGTCGATAGTGTCCGAGGACTCG 89188 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || |||| ||| | |||||| ||||||||||| || || || ||||||||| Sbjct 89187 ACTTCAAGGGTGATCGTCTTTCCGGTCAACGTCTTCACAAAGATTTGCATA 89137 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||||||||| || ||| | || | |||||| ||||| || ||| Sbjct 88878 GTCGACTCCTTTTGAATGTTGTAGTCGGAGAGAGTTCGGCCGTCTTCCAGCTGCTTGCCA 88819 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGT-TT 139686 ||| |||||| || ||||| || ||||| || || || ||||| ||| | || | || Sbjct 88818 GCAAAGATCAATCGCTGCTGGTCAGGAGGAATCCCCTCCTTGTC-CTGAATCTTGCTCTT 88760 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||| || | | ||| || || | ||| | ||||| |||||||| || Sbjct 88759 GACATTGTCGATTGTATCACTCGACTCGACTTCCAAGGTGATTGTCTTTCCGGTCAAGGT 88700 Query 139747 TTTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 88699 CTTGACGAAGATCTGCATA 88681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496061910330400