Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq129 96.9 5e-15 seq24 95.1 2e-14 seq190 91.5 2e-13 >seq129 Length=301134 Score = 96.9 bits (106), Expect = 5e-15 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 97991 TGGGTCCATTCAAAACATTACCATCATCCCGGAAGAGTTGCGCAGAATCTACAAGACTGT 98050 ||| ||||| ||||||||| ||| ||| || | ||||||| |||||||||||||| Sbjct 27483 TGGCTCCATCCAAAACATTCCCAACATTCCTGCAGAGTTGAAGGCTATCTACAAGACTGT 27542 Query 98051 CTGGGAGATTCCGACC-AAGACGCTGATCGATATGGCTGCCGACAGAGGTGTCTACATTG 98109 ||||| || | | | ||| | |||||| | ||||||||| |||| | || || | Sbjct 27543 TTGGGAAAT-CAGCCAGAAGGGTATCATCGATCTCGCTGCCGACCGAGGAGCCTTTATCG 27601 Query 98110 ACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGTATGACTTCGA 98169 | || ||||| ||||| | || | || | || | ||| | || |||| Sbjct 27602 ATCAATCGCAATCCCTCAATATCCACATGACCAACCCTTCGATGGGTCAGCTCACGTCGA 27661 Query 98170 TACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTGAGAAC 98224 | ||||| |||| ||||| || || |||||||| ||||||||||| || |||| Sbjct 27662 TGCACTTCTACGGTTGGAAGAAAGGACTCAAGACCGGCATGTACTACTTGCGAAC 27716 Score = 95.1 bits (104), Expect = 2e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 96910 TCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTG 96969 ||||| | ||||| ||||||||||| || || ||||| ||||| | || || ||| | Sbjct 26285 TCTACCTCGAACCCTGGCACGCGGATGTCTTCGACTTCATCGATCTTCGAAAGAACCACG 26344 Query 96970 GCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCA 97029 || ||||| | |||||| | ||| |||| || || |||||| | || || |||||| Sbjct 26345 GCAAGGAAGAAGTCCGAGCCCGAGACCTGTTCTACGCGCTCTGGATCCCCGACATGTTCA 26404 Query 97030 TGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTC 97089 || || ||| | | | ||| ||||| | ||||||||| || || || |||| Sbjct 26405 TGCGACGTGTCGAGGCGGACGGCGACTGGGCGTTGATGTGCCCCAACGAGTGTCCGGGTC 26464 Query 97090 TGTCCGA 97096 ||||||| Sbjct 26465 TGTCCGA 26471 >seq24 Length=437227 Score = 95.1 bits (104), Expect = 2e-14 Identities = 119/161 (74%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 70074 TGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC-TGCGAG 70132 |||| || || || ||||| ||||||||||| | ||| || |||| |||| |||||| Sbjct 155260 TGGGACCGGTCTATGGATTTCAGTGGAGGCATTTCGGCGCCGAGTA-CAAGACGTGCGAG 155318 Query 70133 ACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTCAAGACC 70192 || ||| |||| ||||| || ||||| || | | | ||||||| |||||| | Sbjct 155319 GATGATTATACGGGACAGGGCGTCGATCAGCTGGCGCAAGTGATTGACAAGATCAAGAAC 155378 Query 70193 AATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCC 70233 || || || |||||| ||||| | ||| || |||||||||| Sbjct 155379 AACCCGACGGATAGGCGGATCATTATGAGCGCATGGAATCC 155419 >seq190 Length=239985 Score = 91.5 bits (100), Expect = 2e-13 Identities = 252/381 (66%), Gaps = 23/381 (6%) Strand=Plus/Minus Query 125479 CCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTA 125538 ||||||| |||||||||||||| || |||||||| ||||||||| | ||||| | | Sbjct 13044 CCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCGGGACTGACGTTCTCCAACGAACTCA 12985 Query 125539 TATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGC 125598 | || ||||||||||| || ||| |||||||| || || || || | | ||| Sbjct 12984 TCTCCCGAGACGAGGGACTCCACACCGACTTTGCATGCCTCCTCTT---CACCCACCTGA 12928 Query 125599 GTC-CCGAGTGCAGATCC---AGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTG 125654 | ||| || | || | | || || | ||||| | | || ||||| Sbjct 12927 AACGACGACCGC--ACCCGGAAACCGTGGAACG--CATCATCCGT------GAAGCCGTC 12878 Query 125655 AGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGC 125714 | ||| || || || || || |||| |||||| |||| ||||||||| Sbjct 12877 GACCTCGAATGTGAATTCCTGACGGACGCCCTGCCGGTCTCATTGATCGGCATGAACGAA 12818 Query 125715 AAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGG- 125773 ||||| |||||| ||||||| ||| || || |||||||| || || |||| Sbjct 12817 AAGCTCATGTGCCAGTACATTCGGTTCGTCGCCGATCGTCTGCT---CGTCGCCCTTGGA 12761 Query 125774 --CCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAG 125831 | |||| | ||||||| | || || || || || ||| | ||| || || || Sbjct 12760 AACGACAAGGTGTACAACGATACCAACCCGTTCGACTTTATGGAAAACATTTCGCTCCAG 12701 Query 125832 GGTAAGACCAACTTTTTCGAG 125852 ||||| |||||||||||||| Sbjct 12700 GGTAAAGCCAACTTTTTCGAG 12680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741056078288120